GapMind for Amino acid biosynthesis

 

Alignments for a candidate for prs in Synechococcus elongatus PCC 7942

Align Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PPRibP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 (characterized)
to candidate Synpcc7942_2113 Synpcc7942_2113 ribose-phosphate pyrophosphokinase

Query= SwissProt::P14193
         (317 letters)



>FitnessBrowser__SynE:Synpcc7942_2113
          Length = 331

 Score =  347 bits (890), Expect = e-100
 Identities = 173/309 (55%), Positives = 231/309 (74%), Gaps = 2/309 (0%)

Query: 10  LKIFSLNSNPELAKEIADIVGVQLGKCSVTRFSDGEVQINIEESIRGCDCYIIQSTSDPV 69
           L++FS +SN  L++E++  +G+ LG     RF+DGE+ + I+ESIRGCD Y++Q T  PV
Sbjct: 22  LRLFSGSSNSALSQEVSRYLGIDLGPMIRKRFADGELYVQIQESIRGCDVYLMQPTCWPV 81

Query: 70  NEHIMELLIMVDALKRASAKTINIVIPYYGYARQDRKARSREPITAKLFANLLETAGATR 129
           N+H+MELLIM+DA +RASA+ I  V+PYYGYAR DRK   RE ITAKL ANL+  AGA R
Sbjct: 82  NDHLMELLIMIDACRRASARQITAVLPYYGYARADRKTAGRESITAKLVANLITQAGANR 141

Query: 130 VIALDLHAPQIQGFFDIPIDHLMGVPILGEYFEGKNLEDIVIVSPDHGGVTRARKLADRL 189
           V+A+DLH+ QIQG+FDIP DH+ G P+L +Y   KNL D+V+VSPD GGV RAR  A +L
Sbjct: 142 VLAMDLHSAQIQGYFDIPFDHVYGSPVLIDYLRSKNLADLVVVSPDVGGVARARAFAKKL 201

Query: 190 -KAPIAIIDKRRPRPNVAEVMNIVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEV 248
             AP+AIIDKRR   NVAEV+N++G+++GKTA+L+DD+IDTAGTI   A  L + GA +V
Sbjct: 202 DDAPLAIIDKRRQAHNVAEVLNVIGDVQGKTAVLVDDMIDTAGTICEGARLLRKQGASQV 261

Query: 249 YACCTHPVLSGPAVERINNSTI-KELVVTNSIKLPEEKKIERFKQLSVGPLLAEAIIRVH 307
           YAC TH V S PA+ER++ S + +E++VTN+I +PEE +  +   LSV  LL E I R+H
Sbjct: 262 YACATHAVFSPPAIERLSASGLFEEVIVTNTIPIPEENRFPQLTILSVANLLGETIWRIH 321

Query: 308 EQQSVSYLF 316
           E+ SVS +F
Sbjct: 322 EESSVSSMF 330


Lambda     K      H
   0.319    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 263
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 331
Length adjustment: 28
Effective length of query: 289
Effective length of database: 303
Effective search space:    87567
Effective search space used:    87567
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate Synpcc7942_2113 Synpcc7942_2113 (ribose-phosphate pyrophosphokinase)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.15901.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15901.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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