Align Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PPRibP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 (characterized)
to candidate Synpcc7942_2113 Synpcc7942_2113 ribose-phosphate pyrophosphokinase
Query= SwissProt::P14193 (317 letters) >FitnessBrowser__SynE:Synpcc7942_2113 Length = 331 Score = 347 bits (890), Expect = e-100 Identities = 173/309 (55%), Positives = 231/309 (74%), Gaps = 2/309 (0%) Query: 10 LKIFSLNSNPELAKEIADIVGVQLGKCSVTRFSDGEVQINIEESIRGCDCYIIQSTSDPV 69 L++FS +SN L++E++ +G+ LG RF+DGE+ + I+ESIRGCD Y++Q T PV Sbjct: 22 LRLFSGSSNSALSQEVSRYLGIDLGPMIRKRFADGELYVQIQESIRGCDVYLMQPTCWPV 81 Query: 70 NEHIMELLIMVDALKRASAKTINIVIPYYGYARQDRKARSREPITAKLFANLLETAGATR 129 N+H+MELLIM+DA +RASA+ I V+PYYGYAR DRK RE ITAKL ANL+ AGA R Sbjct: 82 NDHLMELLIMIDACRRASARQITAVLPYYGYARADRKTAGRESITAKLVANLITQAGANR 141 Query: 130 VIALDLHAPQIQGFFDIPIDHLMGVPILGEYFEGKNLEDIVIVSPDHGGVTRARKLADRL 189 V+A+DLH+ QIQG+FDIP DH+ G P+L +Y KNL D+V+VSPD GGV RAR A +L Sbjct: 142 VLAMDLHSAQIQGYFDIPFDHVYGSPVLIDYLRSKNLADLVVVSPDVGGVARARAFAKKL 201 Query: 190 -KAPIAIIDKRRPRPNVAEVMNIVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEV 248 AP+AIIDKRR NVAEV+N++G+++GKTA+L+DD+IDTAGTI A L + GA +V Sbjct: 202 DDAPLAIIDKRRQAHNVAEVLNVIGDVQGKTAVLVDDMIDTAGTICEGARLLRKQGASQV 261 Query: 249 YACCTHPVLSGPAVERINNSTI-KELVVTNSIKLPEEKKIERFKQLSVGPLLAEAIIRVH 307 YAC TH V S PA+ER++ S + +E++VTN+I +PEE + + LSV LL E I R+H Sbjct: 262 YACATHAVFSPPAIERLSASGLFEEVIVTNTIPIPEENRFPQLTILSVANLLGETIWRIH 321 Query: 308 EQQSVSYLF 316 E+ SVS +F Sbjct: 322 EESSVSSMF 330 Lambda K H 0.319 0.137 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 263 Number of extensions: 13 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 317 Length of database: 331 Length adjustment: 28 Effective length of query: 289 Effective length of database: 303 Effective search space: 87567 Effective search space used: 87567 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate Synpcc7942_2113 Synpcc7942_2113 (ribose-phosphate pyrophosphokinase)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))
../bin/blast/fastacmd -i /tmp/list.15901.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15901.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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