Align cysteine synthase (EC 2.5.1.47) (characterized)
to candidate GFF1476 PS417_07505 cysteine synthase
Query= BRENDA::P0ABK5 (323 letters) >FitnessBrowser__WCS417:GFF1476 Length = 324 Score = 442 bits (1138), Expect = e-129 Identities = 229/324 (70%), Positives = 264/324 (81%), Gaps = 3/324 (0%) Query: 1 MSKIFEDNSLTIGHTPLVRLNRIG--NGRILAKVESRNPSFSVKCRIGANMIWDAEKRGV 58 MS+IF DN+ +IG+TPLV++NRI ILAK+E RNP +SVKCRIGANMIWDAE G Sbjct: 1 MSRIFADNAHSIGNTPLVQINRIAPRGVTILAKIEGRNPGYSVKCRIGANMIWDAESTGK 60 Query: 59 LKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAK 118 LKPG+ +VEPTSGNTGI LA+VAAARGYKL LTMP +MSIERRK+LKALGA LVLTE AK Sbjct: 61 LKPGMTIVEPTSGNTGIGLAFVAAARGYKLLLTMPASMSIERRKVLKALGAELVLTEPAK 120 Query: 119 GMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFIAGVGT 178 GMKGAI+KA EIVAS+P Y + QF NPANP IHEKTTGPEIW DTDG VDV +AGVGT Sbjct: 121 GMKGAIEKAGEIVASDPATYFMPAQFENPANPAIHEKTTGPEIWNDTDGAVDVLVAGVGT 180 Query: 179 GGTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPAN 238 GGT+TGVSRYIK GK ++SVAVEP SPVI QALAGEEIKP PHKIQGIGAGF+P N Sbjct: 181 GGTITGVSRYIKNIAGK-PILSVAVEPIVSPVITQALAGEEIKPSPHKIQGIGAGFVPKN 239 Query: 239 LDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVI 298 LDL +VD+V +T++E+ + A RLM+EEGIL GIS GAA+A A++L E K IVVI Sbjct: 240 LDLSMVDRVELVTDDESKAMALRLMQEEGILCGISCGAAMAVAVRLAEKPEMQGKTIVVI 299 Query: 299 LPSSGERYLSTALFADLFTEKELQ 322 LP SGERYLS+ LF+DLFTE+E Q Sbjct: 300 LPDSGERYLSSMLFSDLFTEQENQ 323 Lambda K H 0.313 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 405 Number of extensions: 18 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 323 Length of database: 324 Length adjustment: 28 Effective length of query: 295 Effective length of database: 296 Effective search space: 87320 Effective search space used: 87320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 48 (23.1 bits)
Align candidate GFF1476 PS417_07505 (cysteine synthase)
to HMM TIGR01139 (cysK: cysteine synthase A (EC 2.5.1.47))
../bin/blast/fastacmd -i /tmp/list.5079.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5079.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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