Align Imidazole glycerol phosphate synthase subunit HisH; EC 4.3.2.10; IGP synthase glutaminase subunit; EC 3.5.1.2; IGP synthase subunit HisH; ImGP synthase subunit HisH; IGPS subunit HisH (uncharacterized)
to candidate GFF307 PS417_01565 imidazole glycerol phosphate synthase
Query= curated2:Q48C78 (212 letters) >FitnessBrowser__WCS417:GFF307 Length = 212 Score = 403 bits (1035), Expect = e-117 Identities = 191/212 (90%), Positives = 201/212 (94%) Query: 1 MQTVAVIDYGMGNLHSVAKALEHVGAGRVLITSDAKVIREADRVVFPGVGAIRDCMAEIR 60 MQTVAVIDYGMGNLHSVAKALEHVGAG+VLITSDA VIREADRVVFPGVGAIRDCMAEIR Sbjct: 1 MQTVAVIDYGMGNLHSVAKALEHVGAGKVLITSDANVIREADRVVFPGVGAIRDCMAEIR 60 Query: 61 RLGFDSLVREVSQDRPFLGICVGMQALLDRSEESGGVDCIGLFPGQVKFFGKDLYEEGEH 120 RLGFDSLVREVSQDRPFLGICVGMQALLD SEE+ GVDCIGLFPGQVKFFGKDL+E+GEH Sbjct: 61 RLGFDSLVREVSQDRPFLGICVGMQALLDSSEENDGVDCIGLFPGQVKFFGKDLHEDGEH 120 Query: 121 LKVPHMGWNQVAQAVDHPLWHDIPDLARFYFVHSFYIDAANQRQVVGRGHYGLDFAAALA 180 LKVPHMGWN+V Q VDHPLWHD+PD+ARFYFVHS+YI A QVVG GHYG+DFAAALA Sbjct: 121 LKVPHMGWNEVRQTVDHPLWHDVPDMARFYFVHSYYIAAGKPGQVVGGGHYGVDFAAALA 180 Query: 181 DGSRFAVQFHPEKSHTHGLQLLQNFAAWDGRW 212 +GSRFAVQFHPEKSHTHGLQLLQNFAAWDGRW Sbjct: 181 EGSRFAVQFHPEKSHTHGLQLLQNFAAWDGRW 212 Lambda K H 0.325 0.141 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 297 Number of extensions: 6 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 212 Length of database: 212 Length adjustment: 21 Effective length of query: 191 Effective length of database: 191 Effective search space: 36481 Effective search space used: 36481 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 45 (21.9 bits)
Align candidate GFF307 PS417_01565 (imidazole glycerol phosphate synthase)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))
../bin/blast/fastacmd -i /tmp/list.31718.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31718.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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