Align L-threonine dehydratase biosynthetic IlvA; EC 4.3.1.19; Threonine deaminase (uncharacterized)
to candidate GFF2483 PS417_12665 hypothetical protein
Query= curated2:P37946 (422 letters) >FitnessBrowser__WCS417:GFF2483 Length = 340 Score = 235 bits (599), Expect = 2e-66 Identities = 132/320 (41%), Positives = 188/320 (58%), Gaps = 7/320 (2%) Query: 13 VKHILKAHQNVKDVVIHTPLQRNDRLSERYECNIYLKREDLQVVRSFKLRGAYHKMKQLS 72 VK IL A V D+ + TPLQ LS + LKREDLQ SFK+RGAY+K+ QL+ Sbjct: 19 VKKILAAP--VYDLAVRTPLQAAPALSALLGNQVLLKREDLQPTFSFKIRGAYNKLVQLT 76 Query: 73 SEQTENGVVCASAGNHAQGVAFSCKHLGIHGKIFMPSTTPRQKVSQVELFGKGFIDIILT 132 EQ GVV ASAGNHAQGVA + + LGI +I MP++TP KV V G +L Sbjct: 77 PEQRARGVVTASAGNHAQGVALAARELGIKARIVMPASTPELKVLGVRSRGA---QAVLH 133 Query: 133 GDTFDDVYKSAAECCEAESRTFIHPFDDPDVMAGQGTLAVEILNDIDTEPHFLFASVGGG 192 G +F A + E+ TF+ PFDDPDV+AGQGT+A+EIL +F VGGG Sbjct: 134 GASFPFALAYALQLAESSGCTFVSPFDDPDVIAGQGTVAMEILRQQQGPLDAIFVPVGGG 193 Query: 193 GLLSGVGTYLKNVSPDTKVIAVEPAGAASYFESNKAGHVVTLDKIDKFVDGAAVKKIGEE 252 GL++GV Y+K + PD ++I VEP G++ + +AG V L +D F DG AV ++G Sbjct: 194 GLIAGVAAYVKYLRPDVRIIGVEPEGSSCLLAALRAGERVVLPSVDGFADGTAVAQVGAH 253 Query: 253 TFRTLETVVDDILLVPEGKVCTSILELYNECAVVAEPAGALSVAALDLY--KDQIKGKNV 310 F VD+++ V +C++I +Y++ + EP+GAL+VA + Y ++G+ + Sbjct: 254 GFEICRDWVDEVITVSNDALCSAIKLIYDDTRSITEPSGALAVAGIRQYVATHNLRGQTL 313 Query: 311 VCVVSGGNNDIGRMQEMKER 330 V + SG N + ++ + ER Sbjct: 314 VAINSGANINFDSLRHVAER 333 Lambda K H 0.318 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 330 Number of extensions: 9 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 422 Length of database: 340 Length adjustment: 30 Effective length of query: 392 Effective length of database: 310 Effective search space: 121520 Effective search space used: 121520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate GFF2483 PS417_12665 (hypothetical protein)
to HMM TIGR01124 (ilvA: threonine ammonia-lyase, biosynthetic (EC 4.3.1.19))
../bin/blast/fastacmd -i /tmp/list.4732.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4732.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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