Align 3-isopropylmalate dehydratase small subunit 1; Alpha-IPM isomerase 1; IPMI 1; Isopropylmalate isomerase 1; EC 4.2.1.33 (characterized)
to candidate GFF1851 PS417_09415 3-isopropylmalate dehydratase
Query= SwissProt::P04787 (201 letters) >FitnessBrowser__WCS417:GFF1851 Length = 204 Score = 168 bits (425), Expect = 7e-47 Identities = 91/194 (46%), Positives = 119/194 (61%), Gaps = 3/194 (1%) Query: 3 EKFTQHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLFNDWRFLDEKGQQPNPEFV 62 + FT TG P+ AAN+DTD I+PKQFL+ + R+G LF D RFL +PNPEFV Sbjct: 4 QPFTLVTGKAAPMLAANIDTDVIMPKQFLKGIDRSGLDRGLFFDLRFLSSG--EPNPEFV 61 Query: 63 LNFPEYQGASILLARENFGCGSSREHAPWALTDYGFKVVIAPSFADIFYGNSFNNQLLPV 122 LN P +QGAS ++ NFGCGSSREHA W L G + +I SFA IFY N N +L + Sbjct: 62 LNQPAWQGASFMVVGPNFGCGSSREHAVWGLKQMGIRALIGSSFAGIFYDNCQRNGVLLI 121 Query: 123 TLSDAQVDELFALVKANPGIKFEVDLEAQVVKAGD-KTYSFKIDDFRRHCMLNGLDSIGL 181 TL +A + L V + VDLEAQ ++ D + +F+ID R+ +L GLD+IG Sbjct: 122 TLDEAVLQTLGKTVSQADQAQISVDLEAQQIRLADGEVIAFQIDTLRKSALLLGLDAIGS 181 Query: 182 TLQHEDAIAAYENK 195 TLQ D I A+E + Sbjct: 182 TLQRSDEIKAFERR 195 Lambda K H 0.321 0.138 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 137 Number of extensions: 7 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 201 Length of database: 204 Length adjustment: 21 Effective length of query: 180 Effective length of database: 183 Effective search space: 32940 Effective search space used: 32940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 45 (21.9 bits)
Align candidate GFF1851 PS417_09415 (3-isopropylmalate dehydratase)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))
../bin/blast/fastacmd -i /tmp/list.26018.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.26018.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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