Align 3-isopropylmalate dehydratase subunit LeuD (EC 4.2.1.33) (characterized)
to candidate GFF3633 PS417_18595 3-isopropylmalate dehydratase
Query= ecocyc::LEUD-MONOMER (201 letters) >FitnessBrowser__WCS417:GFF3633 Length = 214 Score = 256 bits (653), Expect = 3e-73 Identities = 128/202 (63%), Positives = 154/202 (76%), Gaps = 8/202 (3%) Query: 5 FIKHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLFNDWRFLD------EKGQQP- 57 F +HTGLV PLD ANVDTD IIPKQFL+ + RTGFG +LF++WR+LD + ++P Sbjct: 4 FTQHTGLVAPLDRANVDTDQIIPKQFLKSIKRTGFGPNLFDEWRYLDVGYAYQDNSKRPL 63 Query: 58 NPDFVLNFPQYQGASILLARENFGCGSSREHAPWALTDYGFKVVIAPSFADIFYGNSFNN 117 N DFVLN +YQGAS+LLARENFGCGSSREHAPWAL +YGF+ +IAPS+ADIF+ NSF N Sbjct: 64 NKDFVLNAERYQGASVLLARENFGCGSSREHAPWALEEYGFRSIIAPSYADIFFNNSFKN 123 Query: 118 QLLPVKLSDAEVDELFALVKANPGIHFDVDLEAQEV-KAGEKTYRFTIDAFRRHCMMNGL 176 LLP+ L+D EVDELF V+A G VDL AQ V + K Y F +DAFR+HC++NGL Sbjct: 124 GLLPIILTDEEVDELFKQVEAEEGYQLTVDLAAQTVTRPDGKVYHFEVDAFRKHCLINGL 183 Query: 177 DSIGLTLQHDDAIAAYEAKQPA 198 D IGLTLQ DAIAA+EAK A Sbjct: 184 DDIGLTLQDGDAIAAFEAKHRA 205 Lambda K H 0.322 0.138 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 195 Number of extensions: 7 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 201 Length of database: 214 Length adjustment: 21 Effective length of query: 180 Effective length of database: 193 Effective search space: 34740 Effective search space used: 34740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 45 (21.9 bits)
Align candidate GFF3633 PS417_18595 (3-isopropylmalate dehydratase)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))
../bin/blast/fastacmd -i /tmp/list.17334.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17334.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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