Align succinyldiaminopimelate transaminase (EC 2.6.1.17) (characterized)
to candidate GFF1219 PS417_06195 succinyldiaminopimelate aminotransferase
Query= BRENDA::Q9ZEX3 (397 letters) >FitnessBrowser__WCS417:GFF1219 Length = 399 Score = 407 bits (1045), Expect = e-118 Identities = 213/395 (53%), Positives = 262/395 (66%), Gaps = 4/395 (1%) Query: 1 MNPRLDALHPYPFEKLRALLADAGKPTHDLPPINLSIGEPKHAAPACVGQAIAANLAGLS 60 MN L+ L PYPFEKLRALL P D PI LSIGEPKH +P V +A++ NL ++ Sbjct: 1 MNNALNQLQPYPFEKLRALLGSV-TPNPDKRPIALSIGEPKHKSPTFVAEALSNNLDQMA 59 Query: 61 VYPSTKGEPALRQAISQWLSRRYSIPAP--DPESEVLPVLGSREALFAFAQTVIDPSAGA 118 VYP+T G PALR+AI W RR+++P DP +LPV G+REALFAF QTV++ A Sbjct: 60 VYPTTLGIPALREAIGAWCERRFNVPKGWLDPARNILPVNGTREALFAFTQTVVNRGDDA 119 Query: 119 LVVCPNPFYQIYEGAALLAGATPYYVNADPARDFGLRTGRVPDEVWRRTQLVFVCSPGNP 178 LVV PNPFYQIYEGAA LAGA P+Y+ A F V ++W+R Q++F+CSPGNP Sbjct: 120 LVVSPNPFYQIYEGAAFLAGAKPHYLPCLDANGFNPDFEAVTPDIWKRCQILFLCSPGNP 179 Query: 179 AGNVMSLEEWRTLFELSDRHGFVIAAYECYSEIYLDEDTPPLGSLQAARRLGRDRYTNLV 238 G ++ ++ + L L+D + FVIAA ECYSE+Y DE +PP G L A LGR + V Sbjct: 180 TGALIPVDTLKKLIALADEYDFVIAADECYSELYFDEQSPPPGLLSACVELGRQDFKRCV 239 Query: 239 AFSSLSKRSNVPGMRSGFVAGDAALLARFLLYRTYHGSAMSPVVSAASIAAW-SMRRMCR 297 F SLSKRSN+PG+RSGFVAGDA +L FLLYRTYHG AM ASIAAW + Sbjct: 240 VFHSLSKRSNLPGLRSGFVAGDADILKAFLLYRTYHGCAMPVQTQLASIAAWQDEAHVLA 299 Query: 298 KTAQYRAKFEAVLPILQNVLDVRAPQASFYLWAGTPGSDTAFARELYGRTGVTVLPGSLL 357 YR KF+AVL IL+ VLDV +P FYLW G D F R+L+ VTV+PGS L Sbjct: 300 NRDLYREKFDAVLAILKPVLDVESPDGGFYLWPNVNGDDAGFCRDLFVEEHVTVVPGSYL 359 Query: 358 AREAHNANPGQGRIRIALVAPLDQCVQAAERIAHF 392 +RE NPG GR+R+ALVAPL +CV+AAERI F Sbjct: 360 SREVDGFNPGAGRVRLALVAPLAECVEAAERIRDF 394 Lambda K H 0.321 0.135 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 509 Number of extensions: 25 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 397 Length of database: 399 Length adjustment: 31 Effective length of query: 366 Effective length of database: 368 Effective search space: 134688 Effective search space used: 134688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.9 bits)
Align candidate GFF1219 PS417_06195 (succinyldiaminopimelate aminotransferase)
to HMM TIGR03538 (dapC: succinyldiaminopimelate transaminase (EC 2.6.1.17))
../bin/blast/fastacmd -i /tmp/list.17877.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17877.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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