Align 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase; EC 2.3.1.117 (characterized)
to candidate GFF1216 PS417_06180 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
Query= SwissProt::G3XD76 (344 letters) >FitnessBrowser__WCS417:GFF1216 Length = 344 Score = 585 bits (1509), Expect = e-172 Identities = 294/344 (85%), Positives = 318/344 (92%) Query: 1 MSQSLFSLAFGVGTQNRQEAWLEVFYALPLLKPSSEIVAAVAPILGYAAGNQALTFTSQQ 60 MS SLFSL FGVGTQNRQ AWLEVFYA PLL PS+EIVAAVAPILGY GNQA+TFT Q Sbjct: 1 MSHSLFSLGFGVGTQNRQGAWLEVFYAQPLLNPSAEIVAAVAPILGYTEGNQAITFTISQ 60 Query: 61 AYQLADALKGIDAAQSALLSRLAESQKPLVATLLAEDAAPSSTAEAYLKLHLLSHRLVKP 120 A QLADALK +DA Q+ALL+RLAES PLVATLLAEDAA +ST EAYLKLHLLSHRLVKP Sbjct: 61 ALQLADALKNVDATQAALLNRLAESHTPLVATLLAEDAALTSTPEAYLKLHLLSHRLVKP 120 Query: 121 HAVNLSGIFPLLPNVAWTNIGAVDLAELAELQLEARLKGKLLEVFSVDKFPKMTDYVVPA 180 H ++L+G+FP LPNVAWT+ GA+D+AELAE QLEARL+G+LLEVFSVDKFPKMTDYVVP+ Sbjct: 121 HGLSLAGVFPQLPNVAWTSQGAIDIAELAERQLEARLRGELLEVFSVDKFPKMTDYVVPS 180 Query: 181 GVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGC 240 GVRIAD AR+RLGAY+GEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGC Sbjct: 181 GVRIADAARIRLGAYVGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGC 240 Query: 241 STMGTLSGGGNIVISVGEGCLIGANAGIGIPLGDRNIVEAGLYITAGTKVALLDEQNALV 300 STMGTLSGGGNIVI VGEGCLIGANAGIGIPLGDRN VE+GLY+TAGTKVALLDEQN LV Sbjct: 241 STMGTLSGGGNIVIKVGEGCLIGANAGIGIPLGDRNTVESGLYVTAGTKVALLDEQNQLV 300 Query: 301 KVVKARDLAGQPDLLFRRNSQNGAVECKTNKTAIELNEALHAHN 344 KVVKAR+LAGQ DLLFRRNS+ GAVECKT+K+AIELNEALHAHN Sbjct: 301 KVVKARELAGQSDLLFRRNSETGAVECKTHKSAIELNEALHAHN 344 Lambda K H 0.317 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 455 Number of extensions: 14 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 344 Length of database: 344 Length adjustment: 29 Effective length of query: 315 Effective length of database: 315 Effective search space: 99225 Effective search space used: 99225 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate GFF1216 PS417_06180 (2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase)
to HMM TIGR03536 (dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117))
../bin/blast/fastacmd -i /tmp/list.5401.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5401.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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