Align Monofunctional chorismate mutase; EC 5.4.99.5 (characterized)
to candidate GFF324 PS417_01650 chorismate mutase
Query= SwissProt::Q9HU05 (185 letters) >FitnessBrowser__WCS417:GFF324 Length = 178 Score = 84.0 bits (206), Expect = 1e-21 Identities = 58/163 (35%), Positives = 87/163 (53%), Gaps = 9/163 (5%) Query: 23 AQPLSPALQQLLSLSSQRLQLADQVAQSKAQSGKAVQDSPREEQQLQMLAGQAGSHGVGA 82 A P L+ LL+ ++RL++ADQVA SK S K V+D RE++ + ++ QA ++ + A Sbjct: 16 ASAAPPTLEPLLNSIAERLEIADQVALSKWDSKKPVEDKKREQEVIASVSAQAPTYKLDA 75 Query: 83 EQVRLLFAAQIEANKLVQYRLLS-----RPLPDAGQAVDLERIRSRLNQLNLELLRGYAP 137 F+AQIEANKLVQY LS PD + +++IR +L++L LL+ Sbjct: 76 AAAEQFFSAQIEANKLVQYTHLSDWQFQGKAPDDPRPDLIKQIRPQLDELQKRLLQ---- 131 Query: 138 ALAELRVDDCRPRLNQALQRQVRVDRLDELHAIALSRAAGDLC 180 LA+ P+ Q L V D L +A+ RA +LC Sbjct: 132 QLADFTPQRTDPQCPQWLAEAVHEPLNDPLRQLAMIRATAELC 174 Lambda K H 0.320 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 81 Number of extensions: 3 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 185 Length of database: 178 Length adjustment: 19 Effective length of query: 166 Effective length of database: 159 Effective search space: 26394 Effective search space used: 26394 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 44 (21.6 bits)
Align candidate GFF324 PS417_01650 (chorismate mutase)
to HMM TIGR01806 (putative chorismate mutase (EC 5.4.99.5))
../bin/blast/fastacmd -i /tmp/list.21050.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21050.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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