GapMind for Amino acid biosynthesis

 

Alignments for a candidate for cmutase in Pseudomonas simiae WCS417

Align isochorismate lyase (EC 4.2.99.21) (characterized)
to candidate GFF2591 PS417_13205 isochorismate-pyruvate lyase

Query= BRENDA::Q51507
         (101 letters)



>FitnessBrowser__WCS417:GFF2591
          Length = 102

 Score =  138 bits (348), Expect = 1e-38
 Identities = 65/98 (66%), Positives = 77/98 (78%)

Query: 1  MKTPEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFKASEAAIPAPERVAAMLPE 60
          MKTPE CTGL+DIR+AID +D  I+ ALG RM YVKAAS FK  +A+I APERVAAMLP+
Sbjct: 1  MKTPEHCTGLSDIRQAIDSLDQQIIDALGLRMQYVKAASAFKPDQASIAAPERVAAMLPQ 60

Query: 61 RARWAEENGLDAPFVEGLFAQIIHWYIAEQIKYWRQTR 98
          R +WA+  GLD  F+EGLF QIIHWYIAEQ  +W Q +
Sbjct: 61 RRQWAQAVGLDGEFIEGLFNQIIHWYIAEQTAFWLQKK 98


Lambda     K      H
   0.322    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 101
Length of database: 102
Length adjustment: 11
Effective length of query: 90
Effective length of database: 91
Effective search space:     8190
Effective search space used:     8190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 40 (20.0 bits)

Align candidate GFF2591 PS417_13205 (isochorismate-pyruvate lyase)
to HMM PF01817 (CM_2)

Software error:

../bin/blast/fastacmd -i /tmp/list.15921.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15921.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.