Align argininosuccinate synthase (characterized)
to candidate Ac3H11_2616 Argininosuccinate synthase (EC 6.3.4.5)
Query= CharProtDB::CH_024687 (447 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_2616 Length = 445 Score = 700 bits (1807), Expect = 0.0 Identities = 346/442 (78%), Positives = 386/442 (87%), Gaps = 1/442 (0%) Query: 1 MTTILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRA 60 M TIL++LP+GQ++GIAFSGGLDTSAAL WM+ KGA+PYAYTANLGQPDE DYDAIPR+A Sbjct: 1 MATILQNLPLGQKVGIAFSGGLDTSAALHWMKLKGAMPYAYTANLGQPDEPDYDAIPRKA 60 Query: 61 MEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKE 120 MEYGAE ARL+DCR QL EGIAA+Q GAFH +TGGLTYFNTTPLGRAVTGTMLVAAMKE Sbjct: 61 MEYGAEKARLVDCRTQLAHEGIAALQAGAFHISTGGLTYFNTTPLGRAVTGTMLVAAMKE 120 Query: 121 DGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACG 180 D VNIWGDGST+KGNDIERFYRYGLLTN L+IYKPWLD FIDELGGR EMS FM G Sbjct: 121 DDVNIWGDGSTFKGNDIERFYRYGLLTNPSLKIYKPWLDQLFIDELGGRAEMSAFMTQAG 180 Query: 181 FDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIVNPIMGVKFWDESVKIPAEEVTVR 240 F YKMS EKAYSTDSNMLGATHEAKDLE+LNS ++IVNPIMGV FW V++ AEEV+VR Sbjct: 181 FGYKMSAEKAYSTDSNMLGATHEAKDLEFLNSGIRIVNPIMGVAFWKPEVEVKAEEVSVR 240 Query: 241 FEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALL 300 FE+G PVALNG F+D VE++LEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPG+ALL Sbjct: 241 FEEGQPVALNGVEFNDPVELILEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGLALL 300 Query: 301 HIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQGRWFDSQALMLRDSLQRWVASQITGEV 360 HIAYERL+TGIHNEDTIEQY +G +LGRLLYQGRWFD QA+MLR++ QRWVA +TG V Sbjct: 301 HIAYERLVTGIHNEDTIEQYRLNGLKLGRLLYQGRWFDPQAIMLRETAQRWVARAVTGTV 360 Query: 361 TLELRRGNDYSILNTVSENLTYKPERLTMEK-GDSVFSPDDRIGQLTMRNLDITDTREKL 419 TLELRRGNDYS+LNT S NLTY PERL+MEK D+ FSP DRIGQLTMRNLDI+DTR+KL Sbjct: 361 TLELRRGNDYSLLNTESPNLTYAPERLSMEKVEDAPFSPLDRIGQLTMRNLDISDTRDKL 420 Query: 420 FGYAKTGLLSSSAASGVPQVEN 441 YA+ GLLS + + Q+EN Sbjct: 421 GVYARAGLLSLGGNAALAQLEN 442 Lambda K H 0.317 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 651 Number of extensions: 17 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 447 Length of database: 445 Length adjustment: 32 Effective length of query: 415 Effective length of database: 413 Effective search space: 171395 Effective search space used: 171395 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate Ac3H11_2616 (Argininosuccinate synthase (EC 6.3.4.5))
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))
../bin/blast/fastacmd -i /tmp/list.5439.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5439.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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