Align Carbamoyl-phosphate synthase small chain, chloroplastic; Carbamoyl-phosphate synthetase glutamine chain; Protein VENOSA 6; EC 6.3.5.5 (characterized)
to candidate Ac3H11_435 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Query= SwissProt::Q9LVW7 (430 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_435 Length = 405 Score = 330 bits (847), Expect = 4e-95 Identities = 167/378 (44%), Positives = 240/378 (63%), Gaps = 13/378 (3%) Query: 58 ARLVLEDGSIWPAKSFGAPGTRIAELVFNTSLTGYQEILTDPSYAGQFVLMTNPQIGNTG 117 A L L DG+++ S GA GT + E+VFNT++TGYQEILTDPSY Q V +T P IGN G Sbjct: 30 AILALADGTVFIGNSIGATGTTVGEVVFNTAITGYQEILTDPSYCQQIVTLTYPHIGNYG 89 Query: 118 VNPDDEESGQCFLTGLVIRNLSISTSNWRCTKTLADYLTERDIMGVYDLDTRAITRRLR- 176 VN +D E+ + GL+I++L + SN+R T+TL+ YL + + ++DTR +TR LR Sbjct: 90 VNAEDIEADKVHAAGLIIKDLPLLASNFRSTETLSQYLVREKTVAIANIDTRKLTRLLRT 149 Query: 177 ---EDGSLIGVLSTE---QSKTDDELLQMSRSWDIVGIDLISDVSCKSPYEWVDKTNAEW 230 ++G+++G+ + + Q D+ + + + ++ G+DL V+ S YEW T EW Sbjct: 150 QGAQNGAIVGLAAGQVVTQGLIDEAIAKAKAAPNMAGLDLAKVVTTASRYEW---TQTEW 206 Query: 231 DFNT--NSRDGKSYKVIAYDFGIKQNILRRLSSYGCQITVVPSTFPAAEALKMNPDGILF 288 + + V+AYDFG+K+NILR L+ GC++TVVP+ PAAE L MNPDG+ Sbjct: 207 QLGSGYGVLAQPRFHVVAYDFGVKKNILRMLAERGCKVTVVPAQTPAAEVLAMNPDGVFL 266 Query: 289 SNGPGDPSAVPYAVETVKELL-GKVPVYGICMGHQLLGQALGGKTFKMKFGHHGGNHPVR 347 SNGPGDP+ YA+E ++++ VP +GIC+GHQ++ A G TFKM HHG NHPV+ Sbjct: 267 SNGPGDPAPCDYAIEATRQIIDAGVPTFGICLGHQIMALASGATTFKMDNSHHGANHPVK 326 Query: 348 NNRTGQVEISAQNHNYAVDPASLPGGVEVTHVNLNDGSCAGLSFPEMNVMSLQYHPEASP 407 + G+V I++QNH +AVD ASLP + TH++L DG+ GL+ + Q HPEASP Sbjct: 327 DLDNGRVSITSQNHGFAVDMASLPATLRATHISLFDGTLQGLARTDKPAFCFQGHPEASP 386 Query: 408 GPHDSDNAFREFIELMKR 425 GPHD F F LM++ Sbjct: 387 GPHDIAYLFDRFTALMEK 404 Lambda K H 0.316 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 458 Number of extensions: 17 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 430 Length of database: 405 Length adjustment: 32 Effective length of query: 398 Effective length of database: 373 Effective search space: 148454 Effective search space used: 148454 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate Ac3H11_435 (Carbamoyl-phosphate synthase small chain (EC 6.3.5.5))
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.8036.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8036.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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