Align glutamyl-tRNAGln amidotransferase subunit A (EC 6.3.5.7) (characterized)
to candidate Ac3H11_3338 Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)
Query= metacyc::MONOMER-13955 (485 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_3338 Length = 497 Score = 459 bits (1182), Expect = e-134 Identities = 237/493 (48%), Positives = 329/493 (66%), Gaps = 12/493 (2%) Query: 2 SLFDHKITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEA 61 +L D + +L + ++ + + R QA + A++A++ E A A+ D A Sbjct: 5 ALHDLGVAQLATELRERRVSAVEAAQHFLDRAQA-HQNLGAYVAVNPEITLAQARAQDAA 63 Query: 62 VDGRSEHGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGK 121 + + G L G+PI KD VTKG +T SK+L + +DATVV +L DA AVT+GK Sbjct: 64 IAAGTA-GPLAGVPIAHKDIFVTKGFPSTAGSKMLAGYQSPFDATVVTKLADAGAVTLGK 122 Query: 122 LNMDEFAMGSSTENSAYKLT--------KNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGS 173 LN DEFAMGS+ ENSA +NPW D +PGGSSGGSA AVAA P G+ Sbjct: 123 LNCDEFAMGSANENSAVAPVGTDAPAPVRNPWATDRIPGGSSGGSAVAVAARLAPAVTGT 182 Query: 174 DTGGSIRQPASFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGV 233 DTGGSIRQPASFCG+ G+KPTYGR SRYG++AFASSLDQ GP+ R+ ED A LL A+ G Sbjct: 183 DTGGSIRQPASFCGITGIKPTYGRASRYGMIAFASSLDQAGPMARSAEDCALLLSAMCGP 242 Query: 234 DK-MDSTSANVDVPDFLSSLTGDIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGA 292 D DSTS +V +F + L I+GL+I +P E+ GEG+ + R +V ALK E LGA Sbjct: 243 DPDRDSTSLDVPAENFSAKLNDSIEGLRIGIPAEFFGEGLAPDVRAAVDGALKEYEKLGA 302 Query: 293 TWEEVSLPHSKYALATYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFG 352 +SLP ++ ++ YY+++ +EAS+NL+RFDG+++G+R + +L+D+YK+TRAEGFG Sbjct: 303 KLVPISLPRTQLSIPVYYIIAPAEASSNLSRFDGVKFGHRAKDYSDLVDMYKKTRAEGFG 362 Query: 353 NEVKRRIMLGTFALSSGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIG 412 +EVKRRIM+G + LS GYYDAYY +AQK+R +I DF++ F+ D+I GP PT A+K+G Sbjct: 363 DEVKRRIMIGAYVLSHGYYDAYYLQAQKIRRMIADDFQNAFKSCDLIAGPVAPTVAWKLG 422 Query: 413 ENTKDPLTMYANDILTIPVNLAGVPGISVPCGLAD-GLPLGLQIIGKHFDESTVYRVAHA 471 ++ DPL Y DI T+P +LAG+PG+SVP G + G+P+GLQ++G +F E+ + AH Sbjct: 423 DHGNDPLADYLADIFTLPGSLAGLPGMSVPAGFGEGGMPVGLQLLGNYFQEARLLNAAHR 482 Query: 472 FEQATDHHKAKPE 484 +QATD H +PE Sbjct: 483 LQQATDFHLRRPE 495 Lambda K H 0.315 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 632 Number of extensions: 26 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 485 Length of database: 497 Length adjustment: 34 Effective length of query: 451 Effective length of database: 463 Effective search space: 208813 Effective search space used: 208813 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.6 bits)
Align candidate Ac3H11_3338 (Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7))
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.27299.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27299.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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