GapMind for Amino acid biosynthesis

 

Alignments for a candidate for hisE in Acidovorax sp. GW101-3H11

Align Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC 3.5.4.19 (characterized)
to candidate Ac3H11_4735 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)

Query= SwissProt::O26347
         (138 letters)



>FitnessBrowser__acidovorax_3H11:Ac3H11_4735
          Length = 129

 Score =  114 bits (286), Expect = 4e-31
 Identities = 60/121 (49%), Positives = 77/121 (63%), Gaps = 6/121 (4%)

Query: 19  NGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQR 78
           + + L+  +AQ+  TG+VLM A+MNREAL +T E G A Y+S SRGKLW KGE SGHVQ 
Sbjct: 10  DAQGLVPVIAQEQGTGDVLMFAWMNREALEKTAELGRAVYFSRSRGKLWFKGEESGHVQT 69

Query: 79  VKDVLVDCDGDAVVLKVEQ----EGGACHTGYRSCFYRSIDGDELKVREDAVKVFDPEEI 134
           V ++ +DCD D V+LKV Q     G ACHTG  SCF+  +        +  +K  DPE I
Sbjct: 70  VHEIRLDCDNDVVLLKVTQLGHEPGIACHTGRHSCFFSVLKDGAWTPVDPVLK--DPESI 127

Query: 135 Y 135
           Y
Sbjct: 128 Y 128


Lambda     K      H
   0.318    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 129
Length adjustment: 15
Effective length of query: 123
Effective length of database: 114
Effective search space:    14022
Effective search space used:    14022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)

Align candidate Ac3H11_4735 (Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19))
to HMM PF01502 (PRA-CH)

Software error:

../bin/blast/fastacmd -i /tmp/list.2672.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.2672.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.