Align Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC 3.5.4.19 (characterized)
to candidate Ac3H11_4735 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)
Query= SwissProt::O26347 (138 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_4735 Length = 129 Score = 114 bits (286), Expect = 4e-31 Identities = 60/121 (49%), Positives = 77/121 (63%), Gaps = 6/121 (4%) Query: 19 NGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQR 78 + + L+ +AQ+ TG+VLM A+MNREAL +T E G A Y+S SRGKLW KGE SGHVQ Sbjct: 10 DAQGLVPVIAQEQGTGDVLMFAWMNREALEKTAELGRAVYFSRSRGKLWFKGEESGHVQT 69 Query: 79 VKDVLVDCDGDAVVLKVEQ----EGGACHTGYRSCFYRSIDGDELKVREDAVKVFDPEEI 134 V ++ +DCD D V+LKV Q G ACHTG SCF+ + + +K DPE I Sbjct: 70 VHEIRLDCDNDVVLLKVTQLGHEPGIACHTGRHSCFFSVLKDGAWTPVDPVLK--DPESI 127 Query: 135 Y 135 Y Sbjct: 128 Y 128 Lambda K H 0.318 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 84 Number of extensions: 8 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 138 Length of database: 129 Length adjustment: 15 Effective length of query: 123 Effective length of database: 114 Effective search space: 14022 Effective search space used: 14022 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 42 (20.8 bits)
Align candidate Ac3H11_4735 (Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19))
to HMM PF01502 (PRA-CH)
../bin/blast/fastacmd -i /tmp/list.2672.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.2672.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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