Align L-threonine dehydratase biosynthetic IlvA; Threonine deaminase; EC 4.3.1.19 (characterized)
to candidate Ac3H11_2042 Threonine dehydratase biosynthetic (EC 4.3.1.19)
Query= SwissProt::P04968 (514 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_2042 Length = 519 Score = 517 bits (1331), Expect = e-151 Identities = 266/510 (52%), Positives = 361/510 (70%), Gaps = 12/510 (2%) Query: 14 AEYLRAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGL 73 A+YL+ +L A VY+ A + L+ + LS RL N +L+KRED+QPV SFKLRGAY MA L Sbjct: 8 ADYLKKILTARVYDVAVESALEPAKSLSRRLHNKVLLKREDQQPVFSFKLRGAYNKMAHL 67 Query: 74 TEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGA 133 T EQ GVI ASAGNHAQGVA S+ +LG +A++VMPT T +KVDAV+ GGEV+LHG Sbjct: 68 TPEQLQRGVICASAGNHAQGVAMSAHKLGTRAVVVMPTTTPQLKVDAVKTLGGEVVLHGE 127 Query: 134 NFDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQ-----DAHLDRVFVPVG 188 ++ +A A L ++QG T+V PFD P+VIAGQGT+A+E+L+Q LD VFV +G Sbjct: 128 SYSDAYEHAARLQKEQGLTFVHPFDDPLVIAGQGTIAMEILRQLQSLGSNQLDAVFVAIG 187 Query: 189 GGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIG 248 GGGL +GVA IK + P+IKVI V+ DS + +++A V LP VGLF++G AVK +G Sbjct: 188 GGGLVSGVANYIKAVRPEIKVIGVQMNDSDAMIQSVNAHQRVTLPDVGLFSDGTAVKLVG 247 Query: 249 DETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGE 308 +ETFR+ Q +D+ +TVD+DA+CAA+KD+F D R++ EP+GALA+A +K+Y+A H +GE Sbjct: 248 EETFRVAQGLVDEFVTVDTDAVCAAIKDIFVDTRSIVEPAGALAVAAIKQYVATHKTKGE 307 Query: 309 RLAHILSGANVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGG-----RS 363 A IL GAN+NF LR+V+ER E+GE+REAL AVTIPEE+GSF +FC+++GG R+ Sbjct: 308 TYAAILCGANMNFDRLRFVAERAEVGEEREALFAVTIPEERGSFRRFCEVVGGLPGGPRN 367 Query: 364 VTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMV 423 VTEFNYR +DA A +FVG+ + G E ++I + G+ +DL+ DE+AK H+R++V Sbjct: 368 VTEFNYRISDAAQAHVFVGI-TTNGKGESEKIAKNFGRHGFEALDLTHDELAKEHLRHLV 426 Query: 424 GGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGD 483 GG + ERL F FPE PGALL+FL+ + WNISLFHYR+ G DYGR+L ++ Sbjct: 427 GGHSALAQDERLMRFTFPERPGALLKFLSLMQPTWNISLFHYRNQGADYGRILVGIQVPP 486 Query: 484 HE-PDFETRLNELGYDCHDETNNPAFRFFL 512 + F+ L LGY +ET NPA+R FL Sbjct: 487 EDTATFDAFLATLGYPYVEETLNPAYRLFL 516 Lambda K H 0.321 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 700 Number of extensions: 33 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 514 Length of database: 519 Length adjustment: 35 Effective length of query: 479 Effective length of database: 484 Effective search space: 231836 Effective search space used: 231836 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)
Align candidate Ac3H11_2042 (Threonine dehydratase biosynthetic (EC 4.3.1.19))
to HMM TIGR01124 (ilvA: threonine ammonia-lyase, biosynthetic (EC 4.3.1.19))
../bin/blast/fastacmd -i /tmp/list.22768.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22768.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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