Align threonine ammonia-lyase (EC 4.3.1.19) (characterized)
to candidate Ac3H11_4836 Threonine dehydratase (EC 4.3.1.19)
Query= BRENDA::Q74FW6 (402 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_4836 Length = 399 Score = 294 bits (752), Expect = 4e-84 Identities = 170/396 (42%), Positives = 242/396 (61%), Gaps = 4/396 (1%) Query: 1 MLPYTLIQEADDRLRKRVRRTELIHSHHFSEKLGIPIYFKCENLQRTGAFKIRGALNFMT 60 ML I++A RL+ +V T + S S+ +G ++ K ENLQ T +FK RGA N +T Sbjct: 1 MLTLQDIRDAATRLQGQVLDTPCVESKTLSQIVGAQVFLKFENLQFTASFKERGACNRLT 60 Query: 61 SQPREALAKGVITASAGNHAQGVAFSADLLGVPSTVFMPESTPPQKVFATRDYGAEVVLT 120 + A+GV+ SAGNHAQGVA+ A LG+ + + MP TP KV TR +GAEVVL Sbjct: 61 LLSEDERARGVVAMSAGNHAQGVAYHAQRLGLRAVIVMPRFTPAVKVERTRGFGAEVVLH 120 Query: 121 GRNFDEAYAAAVQAQEERGALFVHPFDDPLVMAGQGTIGLEVLQELPDVANILVPIGGGG 180 G +EA A + + FVHP+DD V AGQGT+GLE+LQ +PD+ +++ +GGGG Sbjct: 121 GDTLEEARQHAYALADAQRLTFVHPYDDEGVAAGQGTLGLEMLQAVPDLDTLVIAVGGGG 180 Query: 181 LIAGIATAIRETHPHVRIIGVETAAAPSAHYSLQKGKIVQVPVTVTLADGIAVKKPGVNT 240 LI+G+ATA + P + ++GV+T P+ +++ Q T T+A+GIAV PG T Sbjct: 181 LISGVATAAKAIKPGIEVVGVQTTRFPAMVNAVKGTHHPQ--GTSTIAEGIAVGTPGKIT 238 Query: 241 FPIIRDLVDEVVLVEEEEIALAIVALLERTKLLVEGAGAVPLAALLNRRVTDLSGKTV-C 299 I++ LVD++VLV+E +I A++ LLE K LVEGAGA LAAL+ R GK V Sbjct: 239 QEIVKRLVDDLVLVDEGDIEQAVLMLLEIEKTLVEGAGAAGLAALV-RYPERFQGKRVGL 297 Query: 300 VLSGGNIDVKTISVVVERGLVAAGRYLKLKVELDDLPGALARLATEIAEAKANISIITHD 359 VL GGNID ++ ++ERG+V +GR ++KV D+PG LAR+ +A+A ANI + H Sbjct: 298 VLCGGNIDPLLLAAIIERGMVRSGRLARIKVSARDVPGVLARITATVADAGANIGEVHHQ 357 Query: 360 RRSKSLPIGKTEVLIELETRGFEHIQEVISHLQGVG 395 R L E+ + L+TR H+ EV+ L+ G Sbjct: 358 RAFTLLAAQNVEIELVLQTRSKAHVAEVLEQLRTAG 393 Lambda K H 0.319 0.137 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 366 Number of extensions: 13 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 402 Length of database: 399 Length adjustment: 31 Effective length of query: 371 Effective length of database: 368 Effective search space: 136528 Effective search space used: 136528 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate Ac3H11_4836 (Threonine dehydratase (EC 4.3.1.19))
to HMM TIGR01127 (ilvA: threonine ammonia-lyase (EC 4.3.1.19))
../bin/blast/fastacmd -i /tmp/list.20943.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20943.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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