GapMind for Amino acid biosynthesis

 

Alignments for a candidate for metX in Acidovorax sp. GW101-3H11

Align Homoserine O-acetyltransferase; HAT; Homoserine transacetylase; HTA; EC 2.3.1.31 (characterized)
to candidate Ac3H11_4277 Homoserine O-acetyltransferase (EC 2.3.1.31)

Query= SwissProt::Q8TME4
         (540 letters)



>FitnessBrowser__acidovorax_3H11:Ac3H11_4277
          Length = 401

 Score =  342 bits (877), Expect = 2e-98
 Identities = 175/388 (45%), Positives = 242/388 (62%), Gaps = 9/388 (2%)

Query: 36  PGTFGLESGKTLSGVRVEYEMYGKMNADKSNVILICHALTGDAHAAGFHEG-DKKPGWWE 94
           P    L+SG +L    + YE YG +NAD+SN +L+CHAL    H AG + G DK  GWW+
Sbjct: 13  PEVLPLQSGASLRDYHLAYETYGTLNADRSNAVLVCHALNASHHVAGVYAGQDKSEGWWD 72

Query: 95  IVIGPNKAFDTEKYCVICSNILGGCKGSTGPSSIDPETGKHYGISFPVITVKDMVNAQKK 154
            +IGP K  DT+++ VI  N LG C GSTGP    P+TG+ YG  FPV+TV+D VNAQ +
Sbjct: 73  NMIGPGKPVDTDRFFVIGVNNLGSCFGSTGPMHNHPDTGEVYGADFPVVTVEDWVNAQAR 132

Query: 155 LIEHLGVKQLFAVAGGSMGGMQVLQWTVSYPEMVRKAIAIATTASTTPQQIAFGAIGRKA 214
           L++ LG+ QL AV GGS+GGMQ L WT+ YPE +R A+ +A+  + T + IAF  + R+A
Sbjct: 133 LLDRLGITQLAAVLGGSLGGMQALSWTLQYPERMRHAVVVASAPNLTAENIAFNEVARRA 192

Query: 215 ITDDPKWNGGDYYGK-EIPSQGLALARMIGHITYLSDASMQNKFGRLQQDTDKSGIKGTT 273
           I  DP ++GG +Y    IP +GL +ARMIGHITYLSD  M  KFGR  +       +G+ 
Sbjct: 193 IVTDPDFHGGHFYRHGVIPKRGLRIARMIGHITYLSDDVMNEKFGRSLRAPTLPAARGSL 252

Query: 274 GTEGKNSSEISSEISSISSEISSELSYDFTPNFQVESYLNYKGDNFTKRFDANSYLYITK 333
             EG   +         + ++   L       FQ+ESYL Y+GD F+  FDAN+YL IT+
Sbjct: 253 PPEGAGPAR-----GGPAPDLRDYLYSTQDIEFQIESYLRYQGDKFSDYFDANTYLLITR 307

Query: 334 AVDYFDLAK--NGSLIEGFSGVTAKYLVISISSDWLYPPYQSQEIVSALTANGVDARYEE 391
           A+DYFD A+   G+L    +  TAK+L++S ++DW + P +S+EIV AL  N     Y E
Sbjct: 308 ALDYFDPARAHGGNLTRALARATAKFLLVSFTTDWRFSPQRSREIVKALLDNRRRVSYAE 367

Query: 392 IRSQHGHDAFLLEEGQLSYLLRSFLSHI 419
           I + HGHDAFLL++ +   ++RS+   I
Sbjct: 368 IDAPHGHDAFLLDDARYMGVMRSYFDSI 395


Lambda     K      H
   0.315    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 545
Number of extensions: 25
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 401
Length adjustment: 33
Effective length of query: 507
Effective length of database: 368
Effective search space:   186576
Effective search space used:   186576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)

Align candidate Ac3H11_4277 (Homoserine O-acetyltransferase (EC 2.3.1.31))
to HMM TIGR01392 (metX: homoserine O-acetyltransferase (EC 2.3.1.31))

Software error:

../bin/blast/fastacmd -i /tmp/list.8864.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8864.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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