Align amino-acid N-acetyltransferase (EC 2.3.1.1) (characterized)
to candidate Ac3H11_900 N-acetylglutamate synthase (EC 2.3.1.1)
Query= BRENDA::P22567 (432 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_900 Length = 448 Score = 389 bits (999), Expect = e-112 Identities = 201/448 (44%), Positives = 286/448 (63%), Gaps = 27/448 (6%) Query: 4 YVNWLRHASPYINSHRDRTFVVMLPGEGVEHPNFGNIVHDLVLLHSLGARLVLVHGSRPQ 63 +V W R +PYI+ R++TFV+ L GE + NI DL L+ ++G ++VLVHG RPQ Sbjct: 9 FVPWFRSVAPYIHKFRNQTFVIGLTGEAIAAGKLHNIAQDLALIQAMGVKIVLVHGFRPQ 68 Query: 64 IEARLAARGLAPRYHRDLRVTDAPTLECVIDAVGSLRIAIEARLSMDMAASPMQGARLRV 123 + +LAA+G A +Y +R+TD+ L+C +A G LR IEA S + +PM GA +RV Sbjct: 69 VNEQLAAKGHAAKYSHGIRITDSVALDCAQEAAGQLRYEIEAAFSQGLPNTPMAGATVRV 128 Query: 124 AGGNLVTARPIGVVEGVDYHHTGEVRRIDRKGIGRLLDERSIVLLSPLGYSPTGEIFNLA 183 GN +TARP+G+V+GVD+ H+G VR++D GI + LD ++VLLSP G+SPTGE FNL+ Sbjct: 129 ISGNFLTARPVGIVDGVDFQHSGLVRKVDVAGIRQTLDMGALVLLSPFGFSPTGEAFNLS 188 Query: 184 CEDVAMRAAIDLEAEKLILYGAEQGL-------------------LDASGKLVRELRPQQ 224 E+VA AI+L A+KLI QG+ L A+ L+ +L P Q Sbjct: 189 MEEVATSVAIELRADKLIFLTEVQGIRMSPTEPESDDNPIDTELPLAAAQALLAQLPPAQ 248 Query: 225 VPAHLQRLGNSYQAELLDAAAQACRAGVKRSHIVSYTEDGALLSELFTRTGNGTLVAQEQ 284 P L +AC+AGV+RSHI+ + DG+LL E++ G GT+V E+ Sbjct: 249 QPTD--------TGFYLQHCVKACKAGVERSHILPFAVDGSLLLEVYVHDGIGTMVIDEK 300 Query: 285 FEQLREAGIEDVGGLIELIRPLEEQGILVRRSREVLEREIEQFSIVEREGLIIACAALYP 344 E+LREA I+DVGG+++LI P E+ G LV+R R +ER+I ++I+E +G+I CAALYP Sbjct: 301 LEELREATIDDVGGILQLIEPFEKDGTLVKRDRTEIERDIATYTIIEHDGVIFGCAALYP 360 Query: 345 IADSEAGELACLAVNPEYRHGGRGDELLERIEERARGLGLKTLFVLTTRTAHWFRERGFQ 404 +++ E+A + V+P+ + G G++LL+RIE+RAR LGL ++FVLTTRT HWF +RGFQ Sbjct: 361 YPEAKTAEMAAVTVSPQSQGTGDGEKLLKRIEQRARLLGLDSIFVLTTRTMHWFIKRGFQ 420 Query: 405 PSSVERLPAARASLYNFQRNSQVFEKSL 432 P + LP AR YN+ R SQV K L Sbjct: 421 PVDPDWLPDARKRKYNWDRKSQVLVKKL 448 Lambda K H 0.321 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 529 Number of extensions: 20 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 432 Length of database: 448 Length adjustment: 32 Effective length of query: 400 Effective length of database: 416 Effective search space: 166400 Effective search space used: 166400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate Ac3H11_900 (N-acetylglutamate synthase (EC 2.3.1.1))
to HMM TIGR01890 (argA: amino-acid N-acetyltransferase (EC 2.3.1.1))
../bin/blast/fastacmd -i /tmp/list.1806.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1806.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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