Align N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; EC 1.2.1.38; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase (uncharacterized)
to candidate Ac3H11_1253 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Query= curated2:Q1IXY5 (321 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_1253 Length = 310 Score = 327 bits (837), Expect = 3e-94 Identities = 173/317 (54%), Positives = 220/317 (69%), Gaps = 22/317 (6%) Query: 5 RIFIDGEAGTTGLQIRARLEGREDLELLSIDPARRKDPEARRELLNAADIAVLCLHDDVA 64 ++FIDGEAGTTGLQIR RL+ +EL+SI P RKDP A+R+L+ D+ VLCLHDD A Sbjct: 3 KVFIDGEAGTTGLQIRERLQAMPQIELVSIAPELRKDPAAKRDLIAGVDLVVLCLHDDAA 62 Query: 65 REAVAMIEN------PATRVLDASSAHRTAQGWAYGFPELTKQSREEIRAARLVSNPGCY 118 R+ VAM++ +V+DAS+AHRTA GW YGFPEL + +R A VSNPGCY Sbjct: 63 RDTVAMVDEIERSSGRKVKVIDASTAHRTADGWVYGFPELAASQTQAVRDATRVSNPGCY 122 Query: 119 ATGAVALLRPLTDAGLLPPDLPLSVQGFSGYSGGGRALVEAHEGRGEHPMAGPFKSYALS 178 ATGA+A+LRPL DAGL+P D PLS+ SGYSGGGR ++EA+E A P+++YAL Sbjct: 123 ATGAIAMLRPLVDAGLIPADYPLSLPSVSGYSGGGRTMIEAYEA----GTAAPYEAYALG 178 Query: 179 LIHKHQPEMARHGGLKHAPLFTPHVGGWRQGMLVQIPLHLGLL--GVTAAQLHEALADHY 236 L HKH PE+ R+ GL P+F P VG +RQGMLVQ+PLHL LL A+ LH+ALA HY Sbjct: 179 LSHKHIPEILRYTGLTRRPVFIPAVGNFRQGMLVQLPLHLDLLPGAPKASDLHDALASHY 238 Query: 237 A----GERFVRVMPFEHGQPADPI-LDPQTLNGTNELELFVYAGPNGEHALLVSRLDNLG 291 + E++V V+P P D + L TL TN+LEL V+A A++++RLDNLG Sbjct: 239 SHTNTPEQWVSVLP-----PTDDLKLAADTLTDTNKLELRVFANEQYRQAVVIARLDNLG 293 Query: 292 KGASGAAVQNLDVMLGL 308 KGASGAAVQNL +MLG+ Sbjct: 294 KGASGAAVQNLQLMLGV 310 Lambda K H 0.318 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 330 Number of extensions: 16 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 321 Length of database: 310 Length adjustment: 27 Effective length of query: 294 Effective length of database: 283 Effective search space: 83202 Effective search space used: 83202 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate Ac3H11_1253 (N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))
to HMM TIGR01851 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))
../bin/blast/fastacmd -i /tmp/list.5327.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5327.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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