GapMind for Amino acid biosynthesis

 

Alignments for a candidate for argC in Acidovorax sp. GW101-3H11

Align N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; EC 1.2.1.38; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase (uncharacterized)
to candidate Ac3H11_1253 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)

Query= curated2:Q1IXY5
         (321 letters)



>FitnessBrowser__acidovorax_3H11:Ac3H11_1253
          Length = 310

 Score =  327 bits (837), Expect = 3e-94
 Identities = 173/317 (54%), Positives = 220/317 (69%), Gaps = 22/317 (6%)

Query: 5   RIFIDGEAGTTGLQIRARLEGREDLELLSIDPARRKDPEARRELLNAADIAVLCLHDDVA 64
           ++FIDGEAGTTGLQIR RL+    +EL+SI P  RKDP A+R+L+   D+ VLCLHDD A
Sbjct: 3   KVFIDGEAGTTGLQIRERLQAMPQIELVSIAPELRKDPAAKRDLIAGVDLVVLCLHDDAA 62

Query: 65  REAVAMIEN------PATRVLDASSAHRTAQGWAYGFPELTKQSREEIRAARLVSNPGCY 118
           R+ VAM++          +V+DAS+AHRTA GW YGFPEL     + +R A  VSNPGCY
Sbjct: 63  RDTVAMVDEIERSSGRKVKVIDASTAHRTADGWVYGFPELAASQTQAVRDATRVSNPGCY 122

Query: 119 ATGAVALLRPLTDAGLLPPDLPLSVQGFSGYSGGGRALVEAHEGRGEHPMAGPFKSYALS 178
           ATGA+A+LRPL DAGL+P D PLS+   SGYSGGGR ++EA+E       A P+++YAL 
Sbjct: 123 ATGAIAMLRPLVDAGLIPADYPLSLPSVSGYSGGGRTMIEAYEA----GTAAPYEAYALG 178

Query: 179 LIHKHQPEMARHGGLKHAPLFTPHVGGWRQGMLVQIPLHLGLL--GVTAAQLHEALADHY 236
           L HKH PE+ R+ GL   P+F P VG +RQGMLVQ+PLHL LL     A+ LH+ALA HY
Sbjct: 179 LSHKHIPEILRYTGLTRRPVFIPAVGNFRQGMLVQLPLHLDLLPGAPKASDLHDALASHY 238

Query: 237 A----GERFVRVMPFEHGQPADPI-LDPQTLNGTNELELFVYAGPNGEHALLVSRLDNLG 291
           +     E++V V+P     P D + L   TL  TN+LEL V+A      A++++RLDNLG
Sbjct: 239 SHTNTPEQWVSVLP-----PTDDLKLAADTLTDTNKLELRVFANEQYRQAVVIARLDNLG 293

Query: 292 KGASGAAVQNLDVMLGL 308
           KGASGAAVQNL +MLG+
Sbjct: 294 KGASGAAVQNLQLMLGV 310


Lambda     K      H
   0.318    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 330
Number of extensions: 16
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 310
Length adjustment: 27
Effective length of query: 294
Effective length of database: 283
Effective search space:    83202
Effective search space used:    83202
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate Ac3H11_1253 (N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))
to HMM TIGR01851 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.5327.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5327.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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