Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate Ac3H11_2574 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51)
Query= SwissProt::P27603 (365 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_2574 Length = 351 Score = 290 bits (743), Expect = 3e-83 Identities = 157/354 (44%), Positives = 220/354 (62%), Gaps = 10/354 (2%) Query: 12 VRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWVLKHIMELNKGP 71 V+IDS+D+++L L+++RA A++V VK K E F+RP+R A V+ I N GP Sbjct: 1 VQIDSIDQQLLTLLNQRALVAEQVGEVK-----KREGTPFFRPDRVAQVIDKITHANPGP 55 Query: 72 LDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVISKPMAAIDEVF 131 L +A ++REIMS+CLALE P RVA LGPEGTF + AA++ FG + A DEVF Sbjct: 56 LKGPHVAAIWREIMSACLALESPQRVAVLGPEGTFCEQAAIEFFGGAADLMYCANFDEVF 115 Query: 132 REVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHLLVGETTKTDRI 191 AG+ +GVV VENSTEG V +LD FL + GEV L + H+LL T D I Sbjct: 116 HATAAGSAQYGVVGVENSTEGVVTRSLDLFLHTPTHVVGEVSLLVRHNLL-RTTNSLDGI 174 Query: 192 TRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIAGDMAAQLYGLS 251 + +H Q+LAQC+ WL H P+ ER VSSNA+ A+ + AA++ + AA +GL Sbjct: 175 EAVLAHPQALAQCQAWLSKHLPHAERRPVSSNAEGARLATTNPAWAALSSERAATQFGLH 234 Query: 252 KLAEKIEDRPVNSTRFLII----GSQEVPPTGDDKTSIIVSMRNKPGALHELLMPFHSNG 307 ++ I+D N TRF II Q PP+G D TS++VS+ N+PGA+H+LL+P ++G Sbjct: 235 IVSHAIQDDAYNRTRFAIICLPHTLQTPPPSGKDCTSLVVSVPNQPGAVHDLLVPLKTHG 294 Query: 308 IDLTRIETRPSRSGKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGSYP 361 + +TR E+RP+R+G+W Y F+ID GH P + LE++ KVLG+YP Sbjct: 295 VSMTRFESRPARTGQWEYYFYIDLDGHPAQPHVARALEELRSLCAFYKVLGTYP 348 Lambda K H 0.319 0.133 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 350 Number of extensions: 12 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 365 Length of database: 351 Length adjustment: 29 Effective length of query: 336 Effective length of database: 322 Effective search space: 108192 Effective search space used: 108192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate Ac3H11_2574 (Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51))
to HMM TIGR01807 (pheA: chorismate mutase (EC 5.4.99.5))
../bin/blast/fastacmd -i /tmp/list.25697.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.25697.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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