Align dihydroxyacid dehydratase (EC 4.2.1.9) (characterized)
to candidate Ac3H11_954 Dihydroxy-acid dehydratase (EC 4.2.1.9)
Query= metacyc::MONOMER-18815 (557 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_954 Length = 567 Score = 875 bits (2260), Expect = 0.0 Identities = 427/554 (77%), Positives = 491/554 (88%) Query: 4 NKRSQNITQGVARSPNRSMYYALGYKKEDFDKPMVGIANGHSTITPCNAGLQRLADAAID 63 N+RS NITQG +R+PNRSMYYA+GY++ DF KPMVG+ANGHSTITPCN+GLQ+LADAAI Sbjct: 12 NRRSANITQGKSRAPNRSMYYAMGYEEGDFVKPMVGVANGHSTITPCNSGLQKLADAAIA 71 Query: 64 AIKASDANPQVFGTPTISDGMSMGTEGMKYSLISREVIADCIETAAQGQWMDGVVVIGGC 123 I+ + N QVFGTPTISDGM+MGTEGMKYSL+SREVI+DCIET GQWMDGV+V+GGC Sbjct: 72 GIEEAGGNAQVFGTPTISDGMAMGTEGMKYSLVSREVISDCIETCVGGQWMDGVLVVGGC 131 Query: 124 DKNMPGGMIALARTNVPGIYVYGGTIKPGNWKGKDLTIVSSFEAVGEFTAGRMSQEDFEG 183 DKNMPGG++ + R NVP IYVYGGTI PG+++GKDL IVS FEAVGE AG++S D + Sbjct: 132 DKNMPGGLMGMLRANVPAIYVYGGTILPGHYQGKDLNIVSVFEAVGENAAGKLSDFDLKE 191 Query: 184 VEKNACPSTGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLVEAI 243 +EK A P TGSCGGMYTANTMSS+FEALG+SL YSSTMANP EK++SA ESA+VL+EAI Sbjct: 192 IEKRAIPGTGSCGGMYTANTMSSAFEALGISLPYSSTMANPHDEKMNSAKESAKVLIEAI 251 Query: 244 KQDIKPRDIITRKSIENAVALIMATGGSTNAVLHYLAIAHAAEVEWTIDDFERIRRKVPV 303 K+DIKPRDI+T+KSIENAVA+IMATGGSTNAVLH+LAIAHAA VEW+IDDFER+R K PV Sbjct: 252 KKDIKPRDIVTKKSIENAVAVIMATGGSTNAVLHFLAIAHAAGVEWSIDDFERVRVKTPV 311 Query: 304 ICNLKPSGQYVATDLHKAGGIPQVMKILLKAGMLHGDCLTITGRTLAEELENVPDTPRAD 363 +C+LKPSG+Y+A DLH+AGGIPQVMK+LL AG+LHGDCLTI G+T+AE L++VPD PRAD Sbjct: 312 LCDLKPSGKYLAVDLHRAGGIPQVMKVLLNAGLLHGDCLTIEGKTVAEVLKDVPDQPRAD 371 Query: 364 QDVILPIEKALYAEGHLAILKGNLAEEGAVAKITGLKNPVITGPARVFEDEQSAMEAILA 423 QDVI PI +YA+GHLAILKGNL+ EGAVAKITGLKNPVITGPARVFEDEQSA+EAILA Sbjct: 372 QDVIRPINNPMYAQGHLAILKGNLSPEGAVAKITGLKNPVITGPARVFEDEQSALEAILA 431 Query: 424 DKINAGDILVLRYLGPKGGPGMPEMLAPTSAIIGKGLGESVGFITDGRFSGGTWGMVVGH 483 KI AGD++VLRYLGPKGGPGMPEMLAPT A+IG GLGESVG ITDGRFSGGTWGMVVGH Sbjct: 432 GKIKAGDVMVLRYLGPKGGPGMPEMLAPTGALIGAGLGESVGLITDGRFSGGTWGMVVGH 491 Query: 484 VAPEAYVGGTIALVQEGDSITIDAHKLLLQLNVADEELARRRANWKQPAPRYTRGVLAKF 543 VAPEA GGTIA V EGDSITIDA +LLL+LNV++EE+ARRRA W PAPRYTRGV AKF Sbjct: 492 VAPEAAAGGTIAFVHEGDSITIDARQLLLELNVSEEEIARRRAAWTAPAPRYTRGVQAKF 551 Query: 544 SKLASTASKGAVTD 557 + AS+ASKGAV D Sbjct: 552 AFNASSASKGAVLD 565 Lambda K H 0.316 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1137 Number of extensions: 42 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 557 Length of database: 567 Length adjustment: 36 Effective length of query: 521 Effective length of database: 531 Effective search space: 276651 Effective search space used: 276651 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)
Align candidate Ac3H11_954 (Dihydroxy-acid dehydratase (EC 4.2.1.9))
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.6774.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.6774.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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