Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate Ac3H11_3369 Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Query= reanno::BFirm:BPHYT_RS16285 (307 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_3369 Length = 305 Score = 458 bits (1178), Expect = e-134 Identities = 217/306 (70%), Positives = 260/306 (84%), Gaps = 2/306 (0%) Query: 3 MADRDGKIWMDGKLIDWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLQEHTKR 62 MADRDGKIWMDG+++DWRDAKIHVLTHTLHYG G FEGVRAY TA+G TAIFRL+EHT R Sbjct: 1 MADRDGKIWMDGQMVDWRDAKIHVLTHTLHYGCGAFEGVRAYNTANG-TAIFRLEEHTDR 59 Query: 63 LLNSAKIFQMDVPFDHETLAAAQCEVVRENKLESCYLRPIIWVGSEKLGVSAKGNTIHVA 122 L NSAKI +M +PF E + AQ VVRENKLESCYLRP+ W+GS+KLGVS KGN IH+ Sbjct: 60 LFNSAKILRMKIPFTKEEVNEAQKAVVRENKLESCYLRPLTWIGSQKLGVSPKGNQIHLM 119 Query: 123 IAAWPWGAYLGEDGIAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADGYD 182 +AAW WGAYLGE+G+ +GIRVKTSS+TRHHVN++M +AKA Y NSILAN EA+ DGYD Sbjct: 120 VAAWAWGAYLGEEGLKRGIRVKTSSYTRHHVNITMTQAKAVSNYTNSILANMEALDDGYD 179 Query: 183 EALLLDVDGYVSEGSGENFFLVNNGKLYTPDLSS-CLDGITRDTVITLARDAGIQVIEKR 241 EALLLD G+VSEG+GEN F++ NG +YTPDLS+ L+GITR+TV +A+D G+++++KR Sbjct: 180 EALLLDSSGFVSEGAGENIFVIKNGVIYTPDLSAGALNGITRNTVFHIAKDLGLEIVQKR 239 Query: 242 ITRDEVYTCDEAFFTGTAAEVTPIRELDNRTIGSGARGPITEKLQSGFFDIVNGKSDKYA 301 ITRDEVY DEAFFTGTAAEVTPIRELD +GSG+RGPITEK+QS FFDIVNG++ YA Sbjct: 240 ITRDEVYIADEAFFTGTAAEVTPIRELDRIELGSGSRGPITEKIQSAFFDIVNGRNSNYA 299 Query: 302 NWLTKI 307 +WLTK+ Sbjct: 300 HWLTKV 305 Lambda K H 0.319 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 384 Number of extensions: 4 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 307 Length of database: 305 Length adjustment: 27 Effective length of query: 280 Effective length of database: 278 Effective search space: 77840 Effective search space used: 77840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate Ac3H11_3369 (Branched-chain amino acid aminotransferase (EC 2.6.1.42))
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))
../bin/blast/fastacmd -i /tmp/list.15997.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15997.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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