Align 3-dehydroquinate synthase, chloroplastic; EC 4.2.3.4 (characterized)
to candidate AZOBR_RS03220 AZOBR_RS03220 3-dehydroquinate synthase
Query= SwissProt::U3KRF2 (445 letters) >FitnessBrowser__azobra:AZOBR_RS03220 Length = 378 Score = 289 bits (739), Expect = 1e-82 Identities = 167/360 (46%), Positives = 227/360 (63%), Gaps = 11/360 (3%) Query: 81 PTIVD---VDLGDRSYPIYIGSGLLDQPD-LLQRHVHGKRVLVVTNSTVAPIYLDKVVGA 136 PT +D +DLG RSY I +G +LD + GK +VVT+ VAP +L + Sbjct: 7 PTAIDTVRLDLGPRSYDILVGDRVLDGAGPRIAAITRGKAPIVVTDENVAPRHLPTLERT 66 Query: 137 LTNENPNVSVESVILPDGEKYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYA 196 L + + ++++LP GEK K++ ++ D + ++R +ALGGGVIGD+ G+A Sbjct: 67 LRDAGIEPT-QAIVLPAGEKTKDIAHFERLMDAVLARGIERSAVLLALGGGVIGDITGFA 125 Query: 197 AASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLIDTDTLNTLP 256 AAS LRG++FIQ+PTT+++QVDSSVGGKTGIN GKNLIGAF+QP+ V+ DT TL+TLP Sbjct: 126 AASALRGIDFIQVPTTLLSQVDSSVGGKTGINSPHGKNLIGAFHQPRLVIADTATLDTLP 185 Query: 257 DRELASGLAEVVKYGLIRDANFFEWQEKNMPALMARDPSALAYAIKRSCENKAEVVSLDE 316 RE+ +G AEVVKYGLIR FF W E+N ++A D A +A+ SC KA +V +DE Sbjct: 186 RREVLAGYAEVVKYGLIRLPGFFAWLEENGERVVAGDSDARRHAVTESCRAKAAIVGVDE 245 Query: 317 KESGLRATLNLGHTFGHAIETGFGYG-QWLHGEAVAAGMVMAVDMSYRLGWIDESIVNRA 375 +ESG RA LNLGHTFGHA+E G+G + LHGEAV+ GMV+A D+S RLG + +A Sbjct: 246 RESGDRALLNLGHTFGHALEAATGFGSRLLHGEAVSIGMVLAFDLSVRLGLCPAADAEKA 305 Query: 376 HNILQQAKLPTAPPETMTVEM----FKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYD 431 L + LP P + VE MA DKKV DG + +L++ LG+ D D Sbjct: 306 RAHLARVGLPVRPTDVPGVEWDIDGLILSMAKDKKVKDGRITFVLVRA-LGDAFTQRDVD 364 Lambda K H 0.317 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 396 Number of extensions: 15 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 445 Length of database: 378 Length adjustment: 31 Effective length of query: 414 Effective length of database: 347 Effective search space: 143658 Effective search space used: 143658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate AZOBR_RS03220 AZOBR_RS03220 (3-dehydroquinate synthase)
to HMM TIGR01357 (aroB: 3-dehydroquinate synthase (EC 4.2.3.4))
../bin/blast/fastacmd -i /tmp/list.17403.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17403.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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