GapMind for Amino acid biosynthesis

 

Alignments for a candidate for asp-kinase in Azospirillum brasilense Sp245

Align Aspartate kinase Ask_LysC; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate AZOBR_RS18890 AZOBR_RS18890 aspartate kinase

Query= SwissProt::A4VJB4
         (412 letters)



>FitnessBrowser__azobra:AZOBR_RS18890
          Length = 411

 Score =  441 bits (1135), Expect = e-128
 Identities = 237/411 (57%), Positives = 303/411 (73%), Gaps = 7/411 (1%)

Query: 1   MALIVQKFGGTSVGTVERIEQVAEKVKKFRDGGDDIVVVVSAMSGETNRLIDLAKQISEQ 60
           MA IV KFGGTSVG ++RI+ VA KV++    G  + VVVSAMSG TN+L+     I + 
Sbjct: 1   MARIVLKFGGTSVGDIDRIKNVARKVEQEVKAGHQVAVVVSAMSGVTNQLVKYCNDIDKL 60

Query: 61  PVPRELDVMVSTGEQVTIALLAMALIKRGVPAVSYTGNQVRILTDSAHTKARILQIDAQR 120
              RE D +V++GEQVT  LLA+AL   G+ A S+ G Q+ I +D  H KARI+ ID   
Sbjct: 61  HDAREYDAIVASGEQVTSGLLAIALQSLGIQARSWLGWQIPIYSDETHGKARIVSIDTAE 120

Query: 121 IQRDIKAGRVVVVAGFQGVDEKGNITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYT 180
           + + +  G V VVAGFQGV E G ITTLGRGGSDT+ VALAAALKAD C IYTDVDGVYT
Sbjct: 121 LDKRMNTGEVAVVAGFQGVTETGRITTLGRGGSDTSAVALAAALKADRCDIYTDVDGVYT 180

Query: 181 TDPRVVAKAQRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYSVPLRVLHSFQEG----- 235
           TDPR+V KA++L KIT+EEMLE+AS G+KVLQ R+VE A  + V ++VL SF+E      
Sbjct: 181 TDPRIVTKARKLSKITYEEMLELASQGAKVLQTRSVEMAMNHRVRVQVLSSFEEAAGSAL 240

Query: 236 PGTLITLDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISAANVEVDMIV 295
           PGTL+ +DE+E +E+ ++SGIA++RDEAK+T+ GV D PGVA  I GP++ A V VDMIV
Sbjct: 241 PGTLV-VDEDEIVEKEVVSGIAYSRDEAKITLIGVADRPGVAASIFGPLTDAAVNVDMIV 299

Query: 296 QNVAHD-NTTDFTFTVHRNDYNNALQVLQGIAAEMGAREAIGDTNIAKVSIVGVGMRSHA 354
           QNV+ D  +TD TFTV + D   A++VL+   AE+  +  + D N+ KVS++GVGMRSHA
Sbjct: 300 QNVSEDGKSTDMTFTVGKADIARAVKVLEDAQAELNYKRIVSDANVVKVSVIGVGMRSHA 359

Query: 355 GVASRMFEALAKENINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELDA 405
           GVA RMF+ALA + INIQ+ISTSEIK+SV+I E+Y ELA+RALHTA+ LDA
Sbjct: 360 GVAQRMFKALADKGINIQVISTSEIKISVLIAEEYAELALRALHTAYGLDA 410


Lambda     K      H
   0.317    0.133    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 437
Number of extensions: 22
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 411
Length adjustment: 31
Effective length of query: 381
Effective length of database: 380
Effective search space:   144780
Effective search space used:   144780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate AZOBR_RS18890 AZOBR_RS18890 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.4199.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4199.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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