GapMind for Amino acid biosynthesis

 

Alignments for a candidate for hisE in Azospirillum brasilense Sp245

Align Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC 3.5.4.19 (characterized)
to candidate AZOBR_RS08645 AZOBR_RS08645 phosphoribosyl-AMP cyclohydrolase

Query= SwissProt::O26347
         (138 letters)



>FitnessBrowser__azobra:AZOBR_RS08645
          Length = 144

 Score =  131 bits (329), Expect = 5e-36
 Identities = 63/118 (53%), Positives = 84/118 (71%), Gaps = 2/118 (1%)

Query: 19  NGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQR 78
           N + L+ A+AQ   TGE+LM+A+MNR+A+  TL TG   YWS SR  LW KGE+SG +QR
Sbjct: 25  NADGLVPAIAQAEGTGEILMMAWMNRDAVLETLRTGRVCYWSRSRKGLWRKGETSGQMQR 84

Query: 79  VKDVLVDCDGDAVVLKVEQEGGACHTGYRSCFYRSIDGDELKVREDAVKVFDPEEIYG 136
           +KD  VDCDGD ++L VEQ+G ACHTG RSCFYR++   +L++ +D     DP  +YG
Sbjct: 85  LKDFRVDCDGDTLLLIVEQDGVACHTGRRSCFYRALRDGKLEIVQDVET--DPSVLYG 140


Lambda     K      H
   0.318    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 102
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 144
Length adjustment: 15
Effective length of query: 123
Effective length of database: 129
Effective search space:    15867
Effective search space used:    15867
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)

Align candidate AZOBR_RS08645 AZOBR_RS08645 (phosphoribosyl-AMP cyclohydrolase)
to HMM PF01502 (PRA-CH)

Software error:

../bin/blast/fastacmd -i /tmp/list.5164.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5164.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.