Align (R)-citramalate synthase (EC 2.3.1.182) (characterized)
to candidate AZOBR_RS04265 AZOBR_RS04265 2-isopropylmalate synthase
Query= BRENDA::Q74C76 (528 letters) >FitnessBrowser__azobra:AZOBR_RS04265 Length = 534 Score = 508 bits (1307), Expect = e-148 Identities = 272/524 (51%), Positives = 350/524 (66%), Gaps = 10/524 (1%) Query: 4 VKLYDTTLRDGTQAEDISFLVEDKIRIAHKLDEIGIHYIEGGWPGSNPKDVAFFKDIKKE 63 + LYDTTLRDG Q +D+ F V DKI IA LD +GI Y+EGGWPG+NP D FF + Sbjct: 6 IYLYDTTLRDGAQTQDVDFSVADKIAIARDLDRLGIDYVEGGWPGANPTDDQFFAEAPD- 64 Query: 64 KLSQAKIAAFGSTRRAKVTPDKDHNLKTLIQAEPDVCTIFGKTWDFHVHEALRISLEENL 123 L+++ AFG TRR + D L LIQ++ I GKTWDFHV AL I EEN+ Sbjct: 65 -LARSTFTAFGMTRRPGRSTANDPQLAALIQSKARAVCIVGKTWDFHVDVALAIPREENI 123 Query: 124 ELIFDSLEYLKANVPEVFYDAEHFFDGYKANPDYAIKTLKAAQDAKADCIVLCDTNGGTM 183 ELI DS+ LKA E +DAEHFFDGYK NP YA +KAA +A A +VLCDTNGGT+ Sbjct: 124 ELIADSIAALKAAKGEALFDAEHFFDGYKRNPAYAASCIKAAYEAGARWVVLCDTNGGTL 183 Query: 184 PFELVEIIREVRKHITAP---LGIHTHNDSECAVANSLHAVSEGIVQVQGTINGFGERCG 240 P E+ EI+R+V P LGIH HND+E AVANSL AV G+ VQGTING GERCG Sbjct: 184 PHEIDEIVRQVIDEHGIPGDRLGIHCHNDTENAVANSLAAVRAGVRMVQGTINGLGERCG 243 Query: 241 NANLCSIIPALKLKMKREC-IGDDQLRKLRDLSRFVYELANLSPNKHQAYVGNSAFAHKG 299 NANL S+IP+L LKM + I L L ++SR E N +PN+H YVG SAFAHKG Sbjct: 244 NANLVSLIPSLMLKMGCDVGIKPADLPLLTEISRKFDERLNRAPNRHAPYVGASAFAHKG 303 Query: 300 GVHVSAIQRHPETYEHLRPELVGNMTRVLVSDLSGRSNILAKAEEFNIKMDSKDPVTLEI 359 G+HVSA+++ P +YEH+ PE VGN ++++SD +GRSN++A+ E + +D KD + Sbjct: 304 GLHVSAVEKDPSSYEHVEPEAVGNRRQIVMSDQAGRSNVIARLREMGMAVDPKDERLNRL 363 Query: 360 LENIKEMENRGYQFEGAEASFELLMKRALGTHRKFFSVIGFRVIDEKRHEDQKPL---SE 416 L+ +K+ + GY ++ AEASFELL++R LG +F++ F V DE+R+ + L SE Sbjct: 364 LDIVKQRDTEGYAYDTAEASFELLVRRELGEVPDYFTLKRFHVTDERRYNAKGELVVESE 423 Query: 417 ATIMVKVGGKIEHTAAEGNGPVNALDNALRKALEKFYPRLKEVKLLDYKVRVLPAGQGTA 476 A + VK+GGK H A GNGPVNALD A+RKALE YP L VKL DY+VR+L A GT Sbjct: 424 AVVRVKIGGKEYHEVASGNGPVNALDTAMRKALEPLYPLLDGVKLSDYRVRILAAKDGTG 483 Query: 477 SSIRVLIESGDKESR-WGTVGVSENIVDASYQALLDSVEYKLHK 519 + RVLI S + + + W T+GVS NI++AS +AL+DS +KL K Sbjct: 484 AMPRVLIRSRNGDGQEWSTLGVSTNIIEASMEALVDSYTFKLFK 527 Lambda K H 0.317 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 689 Number of extensions: 24 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 528 Length of database: 534 Length adjustment: 35 Effective length of query: 493 Effective length of database: 499 Effective search space: 246007 Effective search space used: 246007 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.6 bits)
Align candidate AZOBR_RS04265 AZOBR_RS04265 (2-isopropylmalate synthase)
to HMM TIGR00977 (cimA: citramalate synthase (EC 2.3.1.182))
../bin/blast/fastacmd -i /tmp/list.23898.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23898.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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