Align acetohydroxyacid isomeroreductase (EC 1.1.1.86) (characterized)
to candidate AZOBR_RS06570 AZOBR_RS06570 ketol-acid reductoisomerase
Query= metacyc::MONOMER-18814 (338 letters) >FitnessBrowser__azobra:AZOBR_RS06570 Length = 339 Score = 464 bits (1194), Expect = e-135 Identities = 230/339 (67%), Positives = 271/339 (79%), Gaps = 1/339 (0%) Query: 1 MKVFYDKDADLSLIKGKNVTIIGYGSQGHAHALNLKDSGV-NVTVGLRKSGASWNKAANA 59 M+V+YD+DAD++LIKGK V I+GYGSQGHAHA NL+DSGV +V + LR A+ KA A Sbjct: 1 MRVYYDRDADVNLIKGKKVVIVGYGSQGHAHANNLRDSGVKDVRIALRPGSATIKKAEAA 60 Query: 60 GLQVKEVAEAVKGADVVMILLPDEQIADVYKNEVHDNIKEGAALAFAHGFNVHYGAVIPR 119 G V EA ADVVMIL PDE AD+Y++++ N+KEGAALAFAHG NVH+ + PR Sbjct: 61 GFTVMAPGEAAAWADVVMILTPDELQADLYRDDLAKNLKEGAALAFAHGLNVHFNLIEPR 120 Query: 120 ADLDVIMIAPKAPGHTVRATYTQGGGVPHLIAVHQNKSGAARDIALSYATANGGGRAGII 179 ADLDV MIAPK PGHTVR Y +GGGVP L+AVHQN SG DIALSYA+A GGGRAGII Sbjct: 121 ADLDVFMIAPKGPGHTVRGEYQRGGGVPCLVAVHQNASGNGLDIALSYASAIGGGRAGII 180 Query: 180 ETNFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIY 239 ET F+EE ETDLFGEQAVLCGG ELIKAG+ETL EAGYAPEMAYFECLHE+KLIVDL+Y Sbjct: 181 ETTFKEECETDLFGEQAVLCGGLTELIKAGYETLTEAGYAPEMAYFECLHEVKLIVDLMY 240 Query: 240 EGGIANMNYSISNNAEYGEYVTGPRVVTEETKKAMKQCLTDIQTGEYAKSFLLENKAGAP 299 EGG+ANM YSISN AEYG+Y TGPR++T ETK MK+ L DIQTG + + ++LE KAG P Sbjct: 241 EGGMANMRYSISNTAEYGDYKTGPRIITPETKAEMKRVLEDIQTGRFVRDWMLECKAGQP 300 Query: 300 TLISRRRLTAEHQIEEVGAKLRAMMPWIAKNKMVDQSKN 338 + + RR AEH IE+VG KLRAMMPWIA+ ++VD+SKN Sbjct: 301 SFKATRRRNAEHSIEQVGEKLRAMMPWIAERRLVDKSKN 339 Lambda K H 0.316 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 449 Number of extensions: 16 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 338 Length of database: 339 Length adjustment: 28 Effective length of query: 310 Effective length of database: 311 Effective search space: 96410 Effective search space used: 96410 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate AZOBR_RS06570 AZOBR_RS06570 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))
../bin/blast/fastacmd -i /tmp/list.27087.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27087.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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