Align 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (characterized)
to candidate AZOBR_RS14130 AZOBR_RS14130 3-isopropylmalate dehydrogenase
Query= BRENDA::P24404 (370 letters) >FitnessBrowser__azobra:AZOBR_RS14130 Length = 371 Score = 472 bits (1214), Expect = e-138 Identities = 235/368 (63%), Positives = 291/368 (79%), Gaps = 2/368 (0%) Query: 4 RSLFLLPGDGIGPEAMTEVRKLIEYMNSAHNAGFTVSEGLVGGSAYDAHGVAISDADMEK 63 + L LPGDGIGPE M +VR++I++++ N F V+EGLVGG+A DA+GV + D + Sbjct: 5 KKLLFLPGDGIGPEVMRQVRRVIDWLDRKRNVTFDVTEGLVGGAAIDAYGVPLKDETLAD 64 Query: 64 ALAADAILFGAVGGPKWDG-VPYEHRPEAGLLRLRKDLELFANLRPAICYPALAAASSLK 122 ALAADA++ GAVGGPKWD Y RPEAGLL LRK+L LFANLRPA+ + AL AS+LK Sbjct: 65 ALAADAVMLGAVGGPKWDNPTDYTKRPEAGLLSLRKELNLFANLRPAVVFDALVDASTLK 124 Query: 123 PELVEGLDILIVRELTGGVYFGEPKQIIDLGNGQKRGIDTQIYDTFEIERIASVAFELAR 182 ++++GLDILIVRELTGGVYFGEP+ I D+GNG++RG++TQ+Y T EI R+A VAFELAR Sbjct: 125 ADVIKGLDILIVRELTGGVYFGEPRGITDIGNGERRGVNTQVYTTSEIRRVARVAFELAR 184 Query: 183 SRDNRVCSMEKRNVMKSGVLWNQVVTETHAAKYKDVQLEHMLADAGGMQLVRKPKQFDVI 242 R N++ SMEK NVM+SG+LW Q VT+ H ++ DV LEHM AD G MQL++ PKQFDVI Sbjct: 185 KRGNKLHSMEKANVMESGLLWRQEVTKLHQEEFSDVTLEHMYADNGAMQLLKNPKQFDVI 244 Query: 243 VTDNLFGDMLSDVAAMLTGSLGMLPSASLGAPDAKTGKRKAMYEPVHGSAPDIAGKSIAN 302 VTDNLFGD+LSD AAM+TGSLGMLPSASLGAPDA G+RKA+YEPVHGSAPDIAG+ +AN Sbjct: 245 VTDNLFGDILSDEAAMMTGSLGMLPSASLGAPDA-NGQRKALYEPVHGSAPDIAGRDLAN 303 Query: 303 PIAMIASFAMCLRYSFNMVDEATKLEAAIANVLDKGIRTADIMADGCRQVGTSDMGDAVL 362 P A + SFAMCLRYSFNM +EA LE A+ NVL G+RTADIMA G + T+ MGD++L Sbjct: 304 PCATLLSFAMCLRYSFNMDEEAKMLEKAVQNVLSGGMRTADIMAPGMARCSTTVMGDSIL 363 Query: 363 AEFKALSA 370 E L++ Sbjct: 364 RELDKLAS 371 Lambda K H 0.319 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 450 Number of extensions: 11 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 370 Length of database: 371 Length adjustment: 30 Effective length of query: 340 Effective length of database: 341 Effective search space: 115940 Effective search space used: 115940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate AZOBR_RS14130 AZOBR_RS14130 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))
../bin/blast/fastacmd -i /tmp/list.15592.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15592.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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