GapMind for Amino acid biosynthesis

 

Alignments for a candidate for OAT in Azospirillum brasilense Sp245

Align Ornithine aminotransferase; OAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 (characterized)
to candidate AZOBR_RS19590 AZOBR_RS19590 ornithine-oxoacid aminotransferase

Query= SwissProt::P38021
         (401 letters)



>FitnessBrowser__azobra:AZOBR_RS19590
          Length = 405

 Score =  452 bits (1164), Expect = e-132
 Identities = 219/398 (55%), Positives = 283/398 (71%), Gaps = 3/398 (0%)

Query: 4   LSKSKEIIDQTSHYGANNYHPLPIVISEALGAWVKDPEGNEYMDMLSAYSAVNQGHRHPK 63
           L  + ++I      GA+NY PL +V++   G +V D EGN Y+D LSAYSAVNQGH HPK
Sbjct: 2   LQHAADLIGTEHRLGAHNYKPLDVVLARGEGVYVWDTEGNRYLDCLSAYSAVNQGHCHPK 61

Query: 64  IIQALKDQADKITLTSRAFHNDQLGPFYEKTAKLTGKEMILPMNTGAEAVESAVKAARRW 123
           I++A+  QA K+TLTSRAF NDQL  FYE+ A LTG   ILPMN+GAEAVESA+K  R+W
Sbjct: 62  ILEAMVQQASKLTLTSRAFRNDQLALFYEELAALTGSHKILPMNSGAEAVESAIKTVRKW 121

Query: 124 AYEVKGVADNQAEIIACVGNFHGRTMLAVSLSSEEEYKRGFGPMLPGIKLIPYGDVEALR 183
            YEV+GV +NQAEII C  NFHGRT+  VS S++ + + GFGP  PG + +P+GD  AL 
Sbjct: 122 GYEVRGVPENQAEIIVCSDNFHGRTISIVSFSTDPDARGGFGPFTPGFRTVPFGDAAALE 181

Query: 184 QAITPNTAAFLFEPIQGEAGIVIPPEGFLQEAAAICKEENVLFIADEIQTGLGRTGKTFA 243
            A+TPNT A L EPIQGEAG+VIPP G+L+    +C E NV+ I DEIQTGLGRTGK  A
Sbjct: 182 AALTPNTVAVLLEPIQGEAGVVIPPAGYLRRVRDLCTERNVVMILDEIQTGLGRTGKLLA 241

Query: 244 CDWDGIVPDMYILGKALGGGVFPISCIAADREILGVFNPGSHGSTFGGNPLACAVSIASL 303
            + +G+  D+ ++GKAL GG +P+S + ++ E+LGV  PG HGSTFGGNPLACAV+ A++
Sbjct: 242 EEHEGVEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAAM 301

Query: 304 EVLEDEKLADRSLELGEYFKSELESIDSPVIKEVRGRGLFIGVEL---TEAARPYCERLK 360
            VL +E + D +   G YF  +L +I S VI+E RGRGL + VEL      AR YCE L+
Sbjct: 302 RVLVEEGMIDNAAAQGAYFLEQLGAIRSNVIREARGRGLMLAVELHPEAGGARRYCEALR 361

Query: 361 EEGLLCKETHDTVIRFAPPLIISKEDLDWAIEKIKHVL 398
             G+L K+THD  IR APPL+I++E +DWA+E+   VL
Sbjct: 362 ARGVLAKDTHDHTIRIAPPLVITREQVDWALEQFDAVL 399


Lambda     K      H
   0.318    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 451
Number of extensions: 14
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 405
Length adjustment: 31
Effective length of query: 370
Effective length of database: 374
Effective search space:   138380
Effective search space used:   138380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate AZOBR_RS19590 AZOBR_RS19590 (ornithine-oxoacid aminotransferase)
to HMM TIGR01885 (rocD: ornithine--oxo-acid transaminase (EC 2.6.1.13))

Software error:

../bin/blast/fastacmd -i /tmp/list.8348.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8348.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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