Align Ornithine aminotransferase; OAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 (characterized)
to candidate AZOBR_RS19590 AZOBR_RS19590 ornithine-oxoacid aminotransferase
Query= SwissProt::P38021 (401 letters) >FitnessBrowser__azobra:AZOBR_RS19590 Length = 405 Score = 452 bits (1164), Expect = e-132 Identities = 219/398 (55%), Positives = 283/398 (71%), Gaps = 3/398 (0%) Query: 4 LSKSKEIIDQTSHYGANNYHPLPIVISEALGAWVKDPEGNEYMDMLSAYSAVNQGHRHPK 63 L + ++I GA+NY PL +V++ G +V D EGN Y+D LSAYSAVNQGH HPK Sbjct: 2 LQHAADLIGTEHRLGAHNYKPLDVVLARGEGVYVWDTEGNRYLDCLSAYSAVNQGHCHPK 61 Query: 64 IIQALKDQADKITLTSRAFHNDQLGPFYEKTAKLTGKEMILPMNTGAEAVESAVKAARRW 123 I++A+ QA K+TLTSRAF NDQL FYE+ A LTG ILPMN+GAEAVESA+K R+W Sbjct: 62 ILEAMVQQASKLTLTSRAFRNDQLALFYEELAALTGSHKILPMNSGAEAVESAIKTVRKW 121 Query: 124 AYEVKGVADNQAEIIACVGNFHGRTMLAVSLSSEEEYKRGFGPMLPGIKLIPYGDVEALR 183 YEV+GV +NQAEII C NFHGRT+ VS S++ + + GFGP PG + +P+GD AL Sbjct: 122 GYEVRGVPENQAEIIVCSDNFHGRTISIVSFSTDPDARGGFGPFTPGFRTVPFGDAAALE 181 Query: 184 QAITPNTAAFLFEPIQGEAGIVIPPEGFLQEAAAICKEENVLFIADEIQTGLGRTGKTFA 243 A+TPNT A L EPIQGEAG+VIPP G+L+ +C E NV+ I DEIQTGLGRTGK A Sbjct: 182 AALTPNTVAVLLEPIQGEAGVVIPPAGYLRRVRDLCTERNVVMILDEIQTGLGRTGKLLA 241 Query: 244 CDWDGIVPDMYILGKALGGGVFPISCIAADREILGVFNPGSHGSTFGGNPLACAVSIASL 303 + +G+ D+ ++GKAL GG +P+S + ++ E+LGV PG HGSTFGGNPLACAV+ A++ Sbjct: 242 EEHEGVEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAAM 301 Query: 304 EVLEDEKLADRSLELGEYFKSELESIDSPVIKEVRGRGLFIGVEL---TEAARPYCERLK 360 VL +E + D + G YF +L +I S VI+E RGRGL + VEL AR YCE L+ Sbjct: 302 RVLVEEGMIDNAAAQGAYFLEQLGAIRSNVIREARGRGLMLAVELHPEAGGARRYCEALR 361 Query: 361 EEGLLCKETHDTVIRFAPPLIISKEDLDWAIEKIKHVL 398 G+L K+THD IR APPL+I++E +DWA+E+ VL Sbjct: 362 ARGVLAKDTHDHTIRIAPPLVITREQVDWALEQFDAVL 399 Lambda K H 0.318 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 451 Number of extensions: 14 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 401 Length of database: 405 Length adjustment: 31 Effective length of query: 370 Effective length of database: 374 Effective search space: 138380 Effective search space used: 138380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate AZOBR_RS19590 AZOBR_RS19590 (ornithine-oxoacid aminotransferase)
to HMM TIGR01885 (rocD: ornithine--oxo-acid transaminase (EC 2.6.1.13))
../bin/blast/fastacmd -i /tmp/list.8348.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8348.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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