GapMind for Amino acid biosynthesis

 

Alignments for a candidate for proA in Azospirillum brasilense Sp245

Align Gamma-glutamyl phosphate reductase; GPR; Glutamate-5-semialdehyde dehydrogenase; Glutamyl-gamma-semialdehyde dehydrogenase; GSA dehydrogenase; EC 1.2.1.41 (characterized)
to candidate AZOBR_RS04075 AZOBR_RS04075 gamma-glutamyl phosphate reductase

Query= SwissProt::P07004
         (417 letters)



>FitnessBrowser__azobra:AZOBR_RS04075
          Length = 426

 Score =  351 bits (901), Expect = e-101
 Identities = 186/408 (45%), Positives = 260/408 (63%), Gaps = 4/408 (0%)

Query: 5   MGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLD 64
           +G AA+ A+ +LA + S  K++ L   A  + A+   I  AN  DVA A+  GL+  M++
Sbjct: 18  LGRAARAAAAELATVPSPSKDQALRAAAAAIRARKAEIQAANDADVAAAKDRGLAGPMIE 77

Query: 65  RLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYEARPN 124
           RLAL  AR++ +A  +  + +  DP+G VI      +GL ++R RVPLGVIG+IYE+RPN
Sbjct: 78  RLALNDARIEAMAKGLEDIADFPDPIGGVIAEWTRPNGLAIQRVRVPLGVIGIIYESRPN 137

Query: 125 VTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPDRALV 184
           VT D   LCLK+GNA ILRGG E+ R++ A  A + D L++ GLP  A+Q +   DRA V
Sbjct: 138 VTADAGGLCLKSGNAAILRGGSESIRSSHAIAACLADGLRAAGLPEAAIQLVPTTDRAAV 197

Query: 185 SEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESVEIAEALKVIVN 244
             ML M  +ID+++PRGG  L +   E+S IPVI    G   +YVD   +  +A KV++N
Sbjct: 198 GHMLTMRDFIDVIVPRGGKSLIQRIAEESRIPVIKHLDGNNTVYVDAGADPEKARKVVMN 257

Query: 245 AKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAGPAKVVAV 304
           AK +R S C   ETLLV++ IAD+ LP L K + ++G  +  DAAA    QA   +V AV
Sbjct: 258 AKMRRTSICGAAETLLVDRKIADAMLPVLVKDLLDAGCAVRGDAAA----QAVDPRVTAV 313

Query: 305 KAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVDSSAV 364
            AE++D EFL   +   +V  +D AI HI  HG+ H+DAI+T D   A+RF+  +DS  V
Sbjct: 314 TAEDWDTEFLDAIIACGVVDGVDGAIDHINRHGSHHTDAIVTEDPAAAERFLQRIDSGIV 373

Query: 365 YVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGD 412
             NAST+F DGG+FG+GAE+ +ST K HARGP+G E LT+YK++  GD
Sbjct: 374 LWNASTQFADGGEFGMGAEIGISTDKFHARGPVGAEQLTSYKYVVRGD 421


Lambda     K      H
   0.317    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 462
Number of extensions: 19
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 426
Length adjustment: 32
Effective length of query: 385
Effective length of database: 394
Effective search space:   151690
Effective search space used:   151690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate AZOBR_RS04075 AZOBR_RS04075 (gamma-glutamyl phosphate reductase)
to HMM TIGR00407 (proA: glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41))

Software error:

../bin/blast/fastacmd -i /tmp/list.21087.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21087.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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