Align Aspartate kinase Ask_LysC; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate AZOBR_RS18890 AZOBR_RS18890 aspartate kinase
Query= SwissProt::A4VJB4 (412 letters) >FitnessBrowser__azobra:AZOBR_RS18890 Length = 411 Score = 441 bits (1135), Expect = e-128 Identities = 237/411 (57%), Positives = 303/411 (73%), Gaps = 7/411 (1%) Query: 1 MALIVQKFGGTSVGTVERIEQVAEKVKKFRDGGDDIVVVVSAMSGETNRLIDLAKQISEQ 60 MA IV KFGGTSVG ++RI+ VA KV++ G + VVVSAMSG TN+L+ I + Sbjct: 1 MARIVLKFGGTSVGDIDRIKNVARKVEQEVKAGHQVAVVVSAMSGVTNQLVKYCNDIDKL 60 Query: 61 PVPRELDVMVSTGEQVTIALLAMALIKRGVPAVSYTGNQVRILTDSAHTKARILQIDAQR 120 RE D +V++GEQVT LLA+AL G+ A S+ G Q+ I +D H KARI+ ID Sbjct: 61 HDAREYDAIVASGEQVTSGLLAIALQSLGIQARSWLGWQIPIYSDETHGKARIVSIDTAE 120 Query: 121 IQRDIKAGRVVVVAGFQGVDEKGNITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYT 180 + + + G V VVAGFQGV E G ITTLGRGGSDT+ VALAAALKAD C IYTDVDGVYT Sbjct: 121 LDKRMNTGEVAVVAGFQGVTETGRITTLGRGGSDTSAVALAAALKADRCDIYTDVDGVYT 180 Query: 181 TDPRVVAKAQRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYSVPLRVLHSFQEG----- 235 TDPR+V KA++L KIT+EEMLE+AS G+KVLQ R+VE A + V ++VL SF+E Sbjct: 181 TDPRIVTKARKLSKITYEEMLELASQGAKVLQTRSVEMAMNHRVRVQVLSSFEEAAGSAL 240 Query: 236 PGTLITLDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISAANVEVDMIV 295 PGTL+ +DE+E +E+ ++SGIA++RDEAK+T+ GV D PGVA I GP++ A V VDMIV Sbjct: 241 PGTLV-VDEDEIVEKEVVSGIAYSRDEAKITLIGVADRPGVAASIFGPLTDAAVNVDMIV 299 Query: 296 QNVAHD-NTTDFTFTVHRNDYNNALQVLQGIAAEMGAREAIGDTNIAKVSIVGVGMRSHA 354 QNV+ D +TD TFTV + D A++VL+ AE+ + + D N+ KVS++GVGMRSHA Sbjct: 300 QNVSEDGKSTDMTFTVGKADIARAVKVLEDAQAELNYKRIVSDANVVKVSVIGVGMRSHA 359 Query: 355 GVASRMFEALAKENINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELDA 405 GVA RMF+ALA + INIQ+ISTSEIK+SV+I E+Y ELA+RALHTA+ LDA Sbjct: 360 GVAQRMFKALADKGINIQVISTSEIKISVLIAEEYAELALRALHTAYGLDA 410 Lambda K H 0.317 0.133 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 437 Number of extensions: 22 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 412 Length of database: 411 Length adjustment: 31 Effective length of query: 381 Effective length of database: 380 Effective search space: 144780 Effective search space used: 144780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate AZOBR_RS18890 AZOBR_RS18890 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.27029.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27029.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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