GapMind for Amino acid biosynthesis

 

Alignments for a candidate for ilvH in Azospirillum brasilense Sp245

Align acetohydroxyacid synthase subunit B (EC 2.2.1.6) (characterized)
to candidate AZOBR_RS06560 AZOBR_RS06560 acetolactate synthase

Query= metacyc::MONOMER-18810
         (585 letters)



>FitnessBrowser__azobra:AZOBR_RS06560
          Length = 587

 Score =  633 bits (1633), Expect = 0.0
 Identities = 311/570 (54%), Positives = 411/570 (72%), Gaps = 4/570 (0%)

Query: 18  EMIGAEILVHALAEEGVEYVWGYPGGAVLYIYDELHKQTKFEHILVRHEQAAVHAADGYA 77
           ++ GA+I++ AL ++GV+ ++GYPGGAVL IYD + +Q   +HILVRHEQAAVHAA+GYA
Sbjct: 5   KLTGAQIVIKALKDQGVDIIFGYPGGAVLPIYDAIFQQNDIKHILVRHEQAAVHAAEGYA 64

Query: 78  RATGKVGVALVTSGPGVTNAVTGIATAYLDSIPMVVITGNVPTHAIGQDAFQECDTVGIT 137
           R+TGKVG  LVTSGPG TNAVTG+  A  DSIP+V ++G VPTH IG DAFQE DT GIT
Sbjct: 65  RSTGKVGCVLVTSGPGATNAVTGLLDALCDSIPLVCLSGQVPTHLIGNDAFQEADTTGIT 124

Query: 138 RPIVKHNFLVKDVRDLAATIKKAFFIAATGRPGPVVVDIPKDVSRNACKYEYPKSIDMRS 197
           RP  KHN+LVKDV  LA T+ +AF++A +GRPGPV+VDIPKDV      Y  P  +  ++
Sbjct: 125 RPCTKHNYLVKDVNQLARTMHEAFYVARSGRPGPVLVDIPKDVQFADGTYIPPTEVKHKT 184

Query: 198 YNPVNKGHSGQIRKAVALLQGAERPYIYTGGGVVLAN--ASDELRQLAALTGHPVTNTLM 255
           Y P  K    ++ +A+ L+  A+RP  YTGGGVV A   A+  L Q   +TG P+T+TLM
Sbjct: 185 YRPQVKPEIARVEEAIELIATAKRPIFYTGGGVVNAGPIAAKLLTQFVKMTGFPITSTLM 244

Query: 256 GLGAFPGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRVIGNPAHFTSQARKII 315
           GLGAFP +  Q++GMLGMHGTYEAN+AM NCDV+I IGARFDDRV G  + F   ++K I
Sbjct: 245 GLGAFPASDPQWLGMLGMHGTYEANLAMYNCDVMINIGARFDDRVTGKLSEFAPGSKK-I 303

Query: 316 HIDIDPSSISKRVKVDIPIVGNVKDVLQELIAQIKASDIKPKREALAKWWEQIEQWRSVD 375
           H+DIDPSSI+K V VDIPIVG+   VL+++I   KA   +  + AL +WW Q+E WR+ +
Sbjct: 304 HVDIDPSSINKNVAVDIPIVGDAGAVLEDMIRIWKARQKRADQTALKEWWGQVEGWRARN 363

Query: 376 CLKYDRSSEIIKPQYVVEKIWELTKG-DAFICSDVGQHQMWAAQFYKFDEPRRWINSGGL 434
           CL Y+R+  +IKPQY +E++ E  +G + ++ ++VGQHQMWAAQF  FDEP RW+ SGGL
Sbjct: 364 CLNYNRTEAVIKPQYALERLREALRGKNHYVTTEVGQHQMWAAQFLPFDEPNRWMTSGGL 423

Query: 435 GTMGVGLPYAMGIKKAFPEKEVVTITGEGSIQMCIQELSTCLQYDTPVKICSLNNGYLGM 494
           GTMG GLP A+G + A P+  VV ++GE S  M +QE+ T +QY  PVKI  LNN Y+GM
Sbjct: 424 GTMGYGLPAAIGAQLAHPDAIVVDVSGEASFLMNMQEIGTAVQYRAPVKIFILNNKYMGM 483

Query: 495 VRQWQEIEYDNRYSHSYMDALPDFVKLAEAYGHVGMRVEKTSDVEPALREAFRLKDRTVF 554
           VRQWQE+ + +RYS+SY +ALPDFVKLAE++G VG+R    ++V+  + +   + DR   
Sbjct: 484 VRQWQELLHGSRYSNSYSEALPDFVKLAESWGCVGLRATTVAEVDEVIEKMLAVTDRPCI 543

Query: 555 LDFQTDPTENVWPMVQAGKGISEMLLGAED 584
           +D   DP EN +PM+  GK  +E+L G ED
Sbjct: 544 IDIAVDPKENCFPMIPGGKAHNEILFGPED 573


Lambda     K      H
   0.319    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 946
Number of extensions: 24
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 587
Length adjustment: 37
Effective length of query: 548
Effective length of database: 550
Effective search space:   301400
Effective search space used:   301400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)

Align candidate AZOBR_RS06560 AZOBR_RS06560 (acetolactate synthase)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.23332.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23332.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.