Align argininosuccinate lyase (EC 4.3.2.1) (characterized)
to candidate GFF3683 Psest_3751 argininosuccinate lyase
Query= BRENDA::Q9LAE5 (461 letters) >FitnessBrowser__psRCH2:GFF3683 Length = 464 Score = 450 bits (1157), Expect = e-131 Identities = 231/448 (51%), Positives = 306/448 (68%), Gaps = 1/448 (0%) Query: 5 QTWSQRFESALHPAIARFNASIGFDIELIEYDLTGSQAHAKMLAHTGIISSEEGEQLVAG 64 Q+W RF + +ARF AS+ FD L +D+ GS AHA ML G++S++E +Q++A Sbjct: 8 QSWGGRFSEPVDAFVARFTASVEFDKRLYRHDIMGSIAHATMLEKAGVLSADERDQIIAN 67 Query: 65 LEQIRQEHRQGKFHPGVDAEDVHFAVEKRLTEIVGDVGKKLHTARSRNDQVGTDTRLYLR 124 L+ I+ E G F VD EDVH +E RLT+ +G GKKLHT RSRNDQV TD RL+LR Sbjct: 68 LKDIQGEIEAGTFDWRVDLEDVHMNIEARLTDRIGVTGKKLHTGRSRNDQVATDIRLWLR 127 Query: 125 DQIQQIKSELREFQGVLLDIAEKHVETLIPGYTHLQRAQPVSLAHHLLAYFQMAQRDWER 184 D+I I +E+ Q LL +AE +T++PG+THLQ AQPV+ HHLLA+F+M RD+ER Sbjct: 128 DEIDIILAEITRLQQGLLGLAEAEADTIMPGFTHLQTAQPVTFGHHLLAWFEMLSRDYER 187 Query: 185 LGDVSRRVNISPLGCGALAGTTFPIDRHYTAKLLDFDNIYANSLDGVSDRDFAIEFLCAA 244 L D +R N PLG ALAGTT+PI R T +LL F+ I NSLDGVSDRDFAIEF AA Sbjct: 188 LVDCRKRTNRMPLGSAALAGTTYPIQREITCELLGFEAISGNSLDGVSDRDFAIEFCAAA 247 Query: 245 SLIMVHLSRLAEEVILWSSEEFRFVILKDSCATGSSIMPQKKNPDVPELVRGKTGRVFGH 304 SL M+HLSR +EE++LW+S +F+F+ L D TGSSIMPQKKNPDVPELVRGKTGRVFG Sbjct: 248 SLAMMHLSRFSEELVLWTSAQFQFIDLPDRFCTGSSIMPQKKNPDVPELVRGKTGRVFGA 307 Query: 305 LQAMLVIMKGLPLAYNKDLQEDKEGLFDSVNTVKASLEAMTILLREGLEFRTQRLAQAVT 364 L +LV+MKG PLAYNKD QEDKE LFD+ +T++ SL A ++ ++ + + + +A Sbjct: 308 LAGLLVLMKGQPLAYNKDNQEDKEPLFDAADTLRDSLRAFADMV-PAIKPKREIMREAAL 366 Query: 365 EDFSNATDVADYLAARGVPFREAYNLVGKVVKTSIAAGKLLKDLELEEWQQLHPAFAADI 424 FS ATD+ADYL +G+PFR+ + +VG VK + GK L ++ L+E +Q + D+ Sbjct: 367 RGFSTATDLADYLVRKGLPFRDCHEIVGHAVKYGVQTGKDLAEMSLDELRQFSDQISDDV 426 Query: 425 YEAISPRQVVAARNSHGGTGFVQVSKAL 452 + ++ V AR+ GGT QV A+ Sbjct: 427 FAVLTLEGSVNARDHIGGTAPAQVRAAV 454 Lambda K H 0.320 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 515 Number of extensions: 18 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 461 Length of database: 464 Length adjustment: 33 Effective length of query: 428 Effective length of database: 431 Effective search space: 184468 Effective search space used: 184468 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate GFF3683 Psest_3751 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))
../bin/blast/fastacmd -i /tmp/list.20625.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20625.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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