Align Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 (characterized)
to candidate GFF1258 Psest_1291 ornithine carbamoyltransferase
Query= SwissProt::P11724 (305 letters) >FitnessBrowser__psRCH2:GFF1258 Length = 306 Score = 520 bits (1340), Expect = e-152 Identities = 253/304 (83%), Positives = 279/304 (91%) Query: 1 MSVRHFLSFMDYSPEELIGLIRRGSELKDLRNRGVLYEPLKSRVLGMVFEKASTRTRLSF 60 MS RHFLS MD +P+EL L+RRG ELKDLR RGVL+EPLK+RVLGM+FEKASTRTRLSF Sbjct: 1 MSARHFLSLMDCTPQELNSLVRRGIELKDLRKRGVLFEPLKNRVLGMIFEKASTRTRLSF 60 Query: 61 EAGMIQLGGQAIFLSPRDTQLGRGEPIGDSARVMSRMLDGVMIRTFAHATLTEFAAHSKV 120 EAGMIQLGGQAIFLSPRDTQLGRGEPI DSA VMSRMLD VMIRTFAH+TLT+FAA+S V Sbjct: 61 EAGMIQLGGQAIFLSPRDTQLGRGEPISDSAIVMSRMLDAVMIRTFAHSTLTDFAANSSV 120 Query: 121 PVINGLSDDLHPCQLLADMQTFHEHRGSIQGKTVAWIGDGNNMCNSYIEAALKFDFQLRV 180 PVINGLSDDLHPCQL+ADMQTFHEHRGSI GKTVAWIGDGNNMCN+YIEAA++FDFQL+V Sbjct: 121 PVINGLSDDLHPCQLMADMQTFHEHRGSIAGKTVAWIGDGNNMCNTYIEAAIQFDFQLKV 180 Query: 181 ACPEGYEPKAEFVALAGDRLRVVRDPREAVAGAHLVSTDVWASMGQEDEAAARIALFRPY 240 ACPEGYEP AE + AGDR++++RDPREA AGAHL+STDVWASMGQEDEAAAR+A FRPY Sbjct: 181 ACPEGYEPNAELMGRAGDRVQILRDPREAAAGAHLISTDVWASMGQEDEAAARLATFRPY 240 Query: 241 QVNAALLDGAADDVLFMHCLPAHRGEEISEELLDDPRSVAWDQAENRLHAQKALLELLIE 300 QV+ ALLD AA DVLFMHCLPAHRGEEIS +LLDDPRSVAWDQAENRLH QKALLE L+E Sbjct: 241 QVDRALLDCAAADVLFMHCLPAHRGEEISHDLLDDPRSVAWDQAENRLHVQKALLEFLVE 300 Query: 301 HAHY 304 A++ Sbjct: 301 PAYH 304 Lambda K H 0.322 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 379 Number of extensions: 9 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 305 Length of database: 306 Length adjustment: 27 Effective length of query: 278 Effective length of database: 279 Effective search space: 77562 Effective search space used: 77562 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 48 (23.1 bits)
Align candidate GFF1258 Psest_1291 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))
../bin/blast/fastacmd -i /tmp/list.15277.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15277.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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