Align phosphoserine aminotransferase; EC 2.6.1.52 (characterized)
to candidate GFF1940 Psest_1983 phosphoserine aminotransferase
Query= CharProtDB::CH_002572 (362 letters) >FitnessBrowser__psRCH2:GFF1940 Length = 361 Score = 416 bits (1068), Expect = e-121 Identities = 208/358 (58%), Positives = 260/358 (72%), Gaps = 2/358 (0%) Query: 5 FNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVP 64 FNF +GPA LP VL++AQ EL DW+G G SVME+SHR E+ +AE+AE+D RDLL +P Sbjct: 6 FNFCAGPAALPEAVLQRAQAELLDWHGKGLSVMEMSHRSDEYTAIAEKAEQDLRDLLAIP 65 Query: 65 SNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVT 124 SNYKVLF GG QFA +PLN+L + ADY+D G W+ AI+EA+++ NV + Sbjct: 66 SNYKVLFLQGGASQQFAEIPLNLLPEDGVADYIDTGIWSRKAIEEARRFGNVNVAASAKP 125 Query: 125 VDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADVVVAADFSSTILSRPI 184 +D A+ +WQLS+ AAY+HY NETI G+ D P+ G D + D SS ILSR I Sbjct: 126 LDYF-AIPGQNDWQLSERAAYLHYASNETIGGLQFDWVPEVG-DTPLVVDMSSDILSRTI 183 Query: 185 DVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTF 244 DVS++G+IYAGAQKNIGP+GL +VIVREDLLG+A ACP++LDY I DNGSM+NTP TF Sbjct: 184 DVSKFGLIYAGAQKNIGPSGLVVVIVREDLLGRARSACPTMLDYKIAADNGSMYNTPATF 243 Query: 245 AWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKANRSRMNVPFQL 304 +WYLSGLVF+WLK GGV M++ N+ K ++LYG ID SDFY N +A RS MNVPF+L Sbjct: 244 SWYLSGLVFEWLKEQGGVEAMEQRNRAKKDMLYGAIDASDFYTNPIAVNARSWMNVPFRL 303 Query: 305 ADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRHG 362 AD LDK FL + A GL LKGHR VGGMRASIYNA+ L+ V+AL +M EFE+ HG Sbjct: 304 ADERLDKSFLAGADARGLLNLKGHRSVGGMRASIYNAVGLDAVEALVAYMAEFEKEHG 361 Lambda K H 0.319 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 421 Number of extensions: 13 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 362 Length of database: 361 Length adjustment: 29 Effective length of query: 333 Effective length of database: 332 Effective search space: 110556 Effective search space used: 110556 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate GFF1940 Psest_1983 (phosphoserine aminotransferase)
to HMM TIGR01364 (serC: phosphoserine transaminase (EC 2.6.1.52))
../bin/blast/fastacmd -i /tmp/list.27038.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27038.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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