Align Histidinol-phosphate aminotransferase; EC 2.6.1.9; Imidazole acetol-phosphate transaminase (uncharacterized)
to candidate GFF3234 Psest_3297 histidinol-phosphate aminotransferase
Query= curated2:Q48ED0 (350 letters) >FitnessBrowser__psRCH2:GFF3234 Length = 348 Score = 555 bits (1429), Expect = e-163 Identities = 270/347 (77%), Positives = 304/347 (87%) Query: 1 MSKFWSPFVSGLVPYVPGEQPKLTRLVKLNTNENPYGPSPKAVEAMRAALTDDLRLYPDP 60 MSKFWSPFV LVPYVPGEQPKL++LVKLNTNENPYGPSP+A+ AM+A L D LRLYPDP Sbjct: 1 MSKFWSPFVKDLVPYVPGEQPKLSKLVKLNTNENPYGPSPRAIAAMQAELNDSLRLYPDP 60 Query: 61 NSDLLKHAVADYYKVQPNQVFLGNGSDEVLAHIFHALFQHDASLLFPDISYSFYPVYCGL 120 N + LK AVADYY VQP QVF+GNGSDEVLAH FH LFQH LLFPDISYSFYPVYCGL Sbjct: 61 NGERLKQAVADYYGVQPAQVFVGNGSDEVLAHAFHGLFQHAGPLLFPDISYSFYPVYCGL 120 Query: 121 YGIDYEMIALDDQFQIRAEDYAKPNAGIIFPNPNAPTGCLLGLDKVEQIIKASPDSVVVV 180 YGI YE +ALD+QFQI DY +PN GIIFPNPNAPTGCLL L+ +E++++A+ ++VV+V Sbjct: 121 YGIAYETVALDEQFQIDVADYNRPNGGIIFPNPNAPTGCLLALEAIERLLQANTETVVLV 180 Query: 181 DEAYIDFGGETAITLVDRYPNLLVTQTLSKSRSLAGLRVGLAVGHSDLIEALERVKNSFN 240 DEAY+DFGGE+AI LVDRYPNLLVTQTLSKSRSLAGLRVGLAVGH DLIEALER+KNSFN Sbjct: 181 DEAYVDFGGESAIALVDRYPNLLVTQTLSKSRSLAGLRVGLAVGHPDLIEALERIKNSFN 240 Query: 241 SYPLDRMANVGGAAAFEDREHFESTRNKVIESREALVEQLQGKGFEVLPSAANFIFARHP 300 SYPLDR+A G AAAFEDR +F+ T +VI+SREA+V +QG GFEVLPSAANFIFARHP Sbjct: 241 SYPLDRIAIAGAAAAFEDRAYFQQTCQQVIDSREAVVAAMQGLGFEVLPSAANFIFARHP 300 Query: 301 QHDAAALAAKLREQGVIVRHFKQQRIAQFLRISIGTPEQHQALLEGL 347 Q DAA +AA LREQGVIVRHFKQ+RI QFLRI+IGTPEQ+QALLE L Sbjct: 301 QRDAATIAASLREQGVIVRHFKQRRIEQFLRITIGTPEQNQALLEAL 347 Lambda K H 0.319 0.137 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 517 Number of extensions: 16 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 350 Length of database: 348 Length adjustment: 29 Effective length of query: 321 Effective length of database: 319 Effective search space: 102399 Effective search space used: 102399 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate GFF3234 Psest_3297 (histidinol-phosphate aminotransferase)
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))
../bin/blast/fastacmd -i /tmp/list.4175.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4175.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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