GapMind for Amino acid biosynthesis

 

Alignments for a candidate for hisI in Pseudomonas stutzeri RCH2

Align Phosphoribosyl-ATP pyrophosphatase; PRA-PH; EC 3.6.1.31 (uncharacterized)
to candidate GFF3874 Psest_3944 phosphoribosyl-ATP pyrophosphohydrolase

Query= curated2:A1U671
         (109 letters)



>FitnessBrowser__psRCH2:GFF3874
          Length = 110

 Score =  147 bits (371), Expect = 4e-41
 Identities = 77/107 (71%), Positives = 87/107 (81%)

Query: 1   MSDVLERLAQVLEARKDADPDTSYVASLHAKGLNKILEKVGEECTETLLAAKDAEHSGET 60
           MSD L RLA+VLEARK A PD+SYVASL+ KGLNKILEKVGEE  ET+LAAKDA  SG+ 
Sbjct: 1   MSDTLTRLAEVLEARKGAAPDSSYVASLYHKGLNKILEKVGEESVETILAAKDAAVSGDA 60

Query: 61  RDLVYETADLWFHSLVMLSRLGLGPKDVLDELASRFDLSGLEEKASR 107
            DL+YETADLWFHS+VML+ LG  P+ VLDEL  RF LSG  EKA+R
Sbjct: 61  SDLIYETADLWFHSMVMLAALGQHPQAVLDELDRRFGLSGHAEKAAR 107


Lambda     K      H
   0.313    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 110
Length adjustment: 12
Effective length of query: 97
Effective length of database: 98
Effective search space:     9506
Effective search space used:     9506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 40 (20.0 bits)

Align candidate GFF3874 Psest_3944 (phosphoribosyl-ATP pyrophosphohydrolase)
to HMM TIGR03188 (hisE: phosphoribosyl-ATP diphosphatase (EC 3.6.1.31))

Software error:

../bin/blast/fastacmd -i /tmp/list.10636.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10636.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.