Align Phosphoribosyl-ATP pyrophosphatase; PRA-PH; EC 3.6.1.31 (uncharacterized)
to candidate GFF3874 Psest_3944 phosphoribosyl-ATP pyrophosphohydrolase
Query= curated2:A1U671 (109 letters) >FitnessBrowser__psRCH2:GFF3874 Length = 110 Score = 147 bits (371), Expect = 4e-41 Identities = 77/107 (71%), Positives = 87/107 (81%) Query: 1 MSDVLERLAQVLEARKDADPDTSYVASLHAKGLNKILEKVGEECTETLLAAKDAEHSGET 60 MSD L RLA+VLEARK A PD+SYVASL+ KGLNKILEKVGEE ET+LAAKDA SG+ Sbjct: 1 MSDTLTRLAEVLEARKGAAPDSSYVASLYHKGLNKILEKVGEESVETILAAKDAAVSGDA 60 Query: 61 RDLVYETADLWFHSLVMLSRLGLGPKDVLDELASRFDLSGLEEKASR 107 DL+YETADLWFHS+VML+ LG P+ VLDEL RF LSG EKA+R Sbjct: 61 SDLIYETADLWFHSMVMLAALGQHPQAVLDELDRRFGLSGHAEKAAR 107 Lambda K H 0.313 0.131 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 71 Number of extensions: 2 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 109 Length of database: 110 Length adjustment: 12 Effective length of query: 97 Effective length of database: 98 Effective search space: 9506 Effective search space used: 9506 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.0 bits) S2: 40 (20.0 bits)
Align candidate GFF3874 Psest_3944 (phosphoribosyl-ATP pyrophosphohydrolase)
to HMM TIGR03188 (hisE: phosphoribosyl-ATP diphosphatase (EC 3.6.1.31))
../bin/blast/fastacmd -i /tmp/list.10636.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10636.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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