Align Ribose-phosphate pyrophosphokinase; RPPK; EC 2.7.6.1; 5-phospho-D-ribosyl alpha-1-diphosphate; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase (uncharacterized)
to candidate GFF2178 Psest_2222 ribose-phosphate pyrophosphokinase
Query= curated2:Q9PQV0 (330 letters) >FitnessBrowser__psRCH2:GFF2178 Length = 317 Score = 145 bits (365), Expect = 2e-39 Identities = 92/289 (31%), Positives = 148/289 (51%), Gaps = 16/289 (5%) Query: 4 NDDILLFSLSNSHQLANKIANLLKIELSPIRIDKFADGELIVAPQVPVRGRRVIIIQST- 62 N LLF+L + + A ++A + +EL+ I F DGE PV GR+V + + Sbjct: 3 NHPPLLFALQGTQEYAARVARHMGLELAEIEERAFEDGEHKSRALTPVEGRKVAVFHALY 62 Query: 63 ---SKPVNDSLMELLIAIDSIKRASAKAISVVIPYYGYARQDRKAKPREPITARLVAKMI 119 + VND L LL ++K A A+ + VV PY YAR++R+ + ++PI R VA + Sbjct: 63 GDDERSVNDKLCRLLFFCGALKDAGARHVQVVAPYLCYARKERRTQFQDPIITRYVAALF 122 Query: 120 ESAGATSVLTWDIHSLQT-QGFFDIPFDSLEAVWVLMKHYFSAYKDSSNITIVSPDYGGV 178 E+ + T ++H+L F IP +E+ + H F+ + + VSPD GG Sbjct: 123 EACRVDRLTTLEVHNLAAFDNAFRIPTRHIESAELFAAH-FAQLSADAELVAVSPDAGGA 181 Query: 179 KRA----REISIATGATLAIVDKRRSGKNQVEINNVL-GDVKDRDCVIVDDMIDTGGTIL 233 KRA R + TG ++ + N + +L GDV+DR +IVDD+I TGGT+L Sbjct: 182 KRAESFRRALQQHTGRSVGSAYMEKYRSNDIVTGTMLVGDVRDRIAIIVDDLISTGGTLL 241 Query: 234 GAAKIVREKGAKSITIIATHGLFNNNARQHFQQAIKDRIINKICIADTI 282 A + R+ GA+ + A HGLF + ++ + +++ I DT+ Sbjct: 242 RAGEACRKAGARQVHAAAAHGLFTGG-----PELLESPVFDQLVITDTV 285 Lambda K H 0.319 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 221 Number of extensions: 11 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 330 Length of database: 317 Length adjustment: 28 Effective length of query: 302 Effective length of database: 289 Effective search space: 87278 Effective search space used: 87278 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate GFF2178 Psest_2222 (ribose-phosphate pyrophosphokinase)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))
../bin/blast/fastacmd -i /tmp/list.4041.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4041.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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