Align 2-isopropylmalate synthase (EC 2.3.3.13) (characterized)
to candidate GFF1023 Psest_1056 2-isopropylmalate synthase, bacterial type
Query= BRENDA::Q9JZG1 (517 letters) >FitnessBrowser__psRCH2:GFF1023 Length = 514 Score = 667 bits (1722), Expect = 0.0 Identities = 340/514 (66%), Positives = 415/514 (80%), Gaps = 2/514 (0%) Query: 1 MTQTNRVIIFDTTLRDGEQSPGAAMTKEEKIRVARQLEKLGVDIIEAGFAAASPGDFEAV 60 M+ +RVIIFDTTLRDGEQSPGA+MT EEK+R+AR LE+L VD+IEAGFA ASPGDF AV Sbjct: 1 MSSNDRVIIFDTTLRDGEQSPGASMTAEEKLRIARALERLKVDVIEAGFAIASPGDFAAV 60 Query: 61 NAIAKTITKSTVCSLSRAIERDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQV 120 +A I STVCSL+RA++ DI +A EA+A A RIHTFIATSPIHM+YKL+M+P QV Sbjct: 61 KLVADNIKDSTVCSLARAVDADIERAAEALAGANSGRIHTFIATSPIHMQYKLRMQPDQV 120 Query: 121 IEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPY 180 +E AV+AVK AR DVEFSCEDA RSEIDFL I A I+AGA TINIPDTVGY+IP+ Sbjct: 121 VEQAVRAVKKARSLCADVEFSCEDAGRSEIDFLCRIIKAAIDAGARTINIPDTVGYAIPH 180 Query: 181 KTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGLGERAGN 240 + + R+L+ + PN K V+S HCHNDLGLAVANSLAA+ GARQVECT+NGLGERAGN Sbjct: 181 QYADTIRQLLERIPNADKAVFSVHCHNDLGLAVANSLAAVVAGARQVECTINGLGERAGN 240 Query: 241 ASVEEIVMALKVRHDLFGLETGIDTTQIVPSSKLVSTITGYPVQPNKAIVGANAFSHESG 300 A++EEIVMA+K R DL + T I+T I+ +S+LVS ITG+PVQPNKAIVGANAF+HESG Sbjct: 241 AALEEIVMAIKTRQDLINVHTRIETEHILAASRLVSGITGFPVQPNKAIVGANAFAHESG 300 Query: 301 IHQDGVLKHRETYEIMSAESVGWATNRLSLGKLSGRNAFKTKLADLGIELESEEALNAAF 360 IHQDGVLKHRETYEIMSA+SVGW N++ +GK SGR AF+++L +LGI LE +E LNAAF Sbjct: 301 IHQDGVLKHRETYEIMSAQSVGWNANKMVMGKHSGRAAFRSRLDELGIVLEGDE-LNAAF 359 Query: 361 ARFKELADKKREIFDEDLHALVSDEMGSMNAESYKFISQKISTETGEEPRADIVFSIKGE 420 ARFKELADKK EIFDEDL ALVSD + E +K S +++++TG P A +V S+ G Sbjct: 360 ARFKELADKKHEIFDEDLQALVSDTLADEAPEHFKLASLEVASKTGTIPEAKLVISVDGA 419 Query: 421 EKRASATGSGPVDAIFKAIESVAQSGAALQIYSVNAVTQGTESQGETSVRLARGNRVVNG 480 E+ A A GSGPVDA FKAIE+VA+SGA LQ+YSVNA+TQGT+SQGE +VRL +G R+VNG Sbjct: 420 ERSAQAQGSGPVDATFKAIEAVAESGATLQLYSVNAITQGTDSQGEVTVRLEKGGRIVNG 479 Query: 481 QGADTDVLVATAKAYLSALSKLEFSA-AKPKAQG 513 GADTD++VA+AKAYL+AL+ ++ A A P+ +G Sbjct: 480 NGADTDIVVASAKAYLNALNLMQVGAKAHPQVEG 513 Lambda K H 0.313 0.129 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 700 Number of extensions: 22 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 517 Length of database: 514 Length adjustment: 35 Effective length of query: 482 Effective length of database: 479 Effective search space: 230878 Effective search space used: 230878 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 52 (24.6 bits)
Align candidate GFF1023 Psest_1056 (2-isopropylmalate synthase, bacterial type)
to HMM TIGR00973 (leuA: 2-isopropylmalate synthase (EC 2.3.3.13))
../bin/blast/fastacmd -i /tmp/list.8427.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8427.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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