Align anthranilate synthase (EC 4.1.3.27) (characterized)
to candidate GFF3583 Psest_3650 anthranilate synthase component I, non-proteobacterial lineages
Query= BRENDA::P20580 (492 letters) >FitnessBrowser__psRCH2:GFF3583 Length = 494 Score = 830 bits (2145), Expect = 0.0 Identities = 413/489 (84%), Positives = 446/489 (91%) Query: 1 MNREEFLRLAADGYNRIPLSFETLADFDTPLSIYLKLADAPNSYLLESVQGGEKWGRYSI 60 M REEFLRLAA+G+NRIPLSFETLADFDTPLS+YLKLADAPNSYLLESVQGGEKWGRYSI Sbjct: 1 MTREEFLRLAAEGHNRIPLSFETLADFDTPLSLYLKLADAPNSYLLESVQGGEKWGRYSI 60 Query: 61 IGLPCRTVLRVYDHQVRISIDGVETERFDCADPLAFVEEFKARYQVPTVPGLPRFDGGLV 120 IGLPCRTVLRV DH++ ++ DG+ETE + DPLAFVE F+ RY+V V GLPRF+GGLV Sbjct: 61 IGLPCRTVLRVRDHRISVTTDGIETEACEVEDPLAFVESFQQRYRVAPVEGLPRFNGGLV 120 Query: 121 GYFGYDCVRYVEKRLATCPNPDPLGNPDILLMVSDAVVVFDNLAGKIHAIVLADPSEENA 180 GYFGYD VRYVE++L CPNPDPLG PDILLMVSDAVVVFDNLAGK+H IVL DPS+ A Sbjct: 121 GYFGYDSVRYVERKLGNCPNPDPLGTPDILLMVSDAVVVFDNLAGKLHCIVLVDPSQPEA 180 Query: 181 YERGQARLEELLERLRQPITPRRGLDLEAAQGREPAFRASFTREDYENAVGRIKDYILAG 240 YE GQARL+ L +LRQ ITPR GLD E + G EP FR+SF+REDYE AV RIKDYILAG Sbjct: 181 YEAGQARLQALRAKLRQSITPRLGLDFEKSNGAEPTFRSSFSREDYEQAVNRIKDYILAG 240 Query: 241 DCMQVVPSQRMSIEFKAAPIDLYRALRCFNPTPYMYFFNFGDFHVVGSSPEVLVRVEDGL 300 DCMQVV SQRMSI FKAAPIDLYRALRCFNPTPYMYFFNFGDFHVVGSSPEVLVRVE+GL Sbjct: 241 DCMQVVISQRMSIPFKAAPIDLYRALRCFNPTPYMYFFNFGDFHVVGSSPEVLVRVEEGL 300 Query: 301 VTVRPIAGTRPRGINEEADLALEQDLLSDAKEIAEHLMLIDLGRNDVGRVSDIGAVKVTE 360 VTVRPIAGTRPRG +EEADLALEQDLLSDAKE+AEHLMLIDLGRNDVGRV++ G V++TE Sbjct: 301 VTVRPIAGTRPRGASEEADLALEQDLLSDAKELAEHLMLIDLGRNDVGRVAETGTVRLTE 360 Query: 361 KMVIERYSNVMHIVSNVTGQLREGLSAMDALRAILPAGTLSGAPKIRAMEIIDELEPVKR 420 KMVIERYSNVMHIVSNVTGQL+ L+AMDALRAILPAGTLSGAPKIRAMEIIDELEPVKR Sbjct: 361 KMVIERYSNVMHIVSNVTGQLKAPLTAMDALRAILPAGTLSGAPKIRAMEIIDELEPVKR 420 Query: 421 GVYGGAVGYLAWNGNMDTAIAIRTAVIKNGELHVQAGGGIVADSVPALEWEETINKRRAM 480 GVYGGAVGYLAWNGNMDTAIAIRTAVIK+GELHVQAG GIVADS PALEWEET+NKRRAM Sbjct: 421 GVYGGAVGYLAWNGNMDTAIAIRTAVIKDGELHVQAGAGIVADSQPALEWEETLNKRRAM 480 Query: 481 FRAVALAEQ 489 FRAVALAE+ Sbjct: 481 FRAVALAER 489 Lambda K H 0.321 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 809 Number of extensions: 22 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 492 Length of database: 494 Length adjustment: 34 Effective length of query: 458 Effective length of database: 460 Effective search space: 210680 Effective search space used: 210680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)
Align candidate GFF3583 Psest_3650 (anthranilate synthase component I, non-proteobacterial lineages)
to HMM TIGR00564 (trpE: anthranilate synthase component I (EC 4.1.3.27))
../bin/blast/fastacmd -i /tmp/list.3234.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3234.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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