GapMind for Amino acid biosynthesis

 

Alignments for a candidate for trpE in Pseudomonas stutzeri RCH2

Align anthranilate synthase (EC 4.1.3.27) (characterized)
to candidate GFF3583 Psest_3650 anthranilate synthase component I, non-proteobacterial lineages

Query= BRENDA::P20580
         (492 letters)



>FitnessBrowser__psRCH2:GFF3583
          Length = 494

 Score =  830 bits (2145), Expect = 0.0
 Identities = 413/489 (84%), Positives = 446/489 (91%)

Query: 1   MNREEFLRLAADGYNRIPLSFETLADFDTPLSIYLKLADAPNSYLLESVQGGEKWGRYSI 60
           M REEFLRLAA+G+NRIPLSFETLADFDTPLS+YLKLADAPNSYLLESVQGGEKWGRYSI
Sbjct: 1   MTREEFLRLAAEGHNRIPLSFETLADFDTPLSLYLKLADAPNSYLLESVQGGEKWGRYSI 60

Query: 61  IGLPCRTVLRVYDHQVRISIDGVETERFDCADPLAFVEEFKARYQVPTVPGLPRFDGGLV 120
           IGLPCRTVLRV DH++ ++ DG+ETE  +  DPLAFVE F+ RY+V  V GLPRF+GGLV
Sbjct: 61  IGLPCRTVLRVRDHRISVTTDGIETEACEVEDPLAFVESFQQRYRVAPVEGLPRFNGGLV 120

Query: 121 GYFGYDCVRYVEKRLATCPNPDPLGNPDILLMVSDAVVVFDNLAGKIHAIVLADPSEENA 180
           GYFGYD VRYVE++L  CPNPDPLG PDILLMVSDAVVVFDNLAGK+H IVL DPS+  A
Sbjct: 121 GYFGYDSVRYVERKLGNCPNPDPLGTPDILLMVSDAVVVFDNLAGKLHCIVLVDPSQPEA 180

Query: 181 YERGQARLEELLERLRQPITPRRGLDLEAAQGREPAFRASFTREDYENAVGRIKDYILAG 240
           YE GQARL+ L  +LRQ ITPR GLD E + G EP FR+SF+REDYE AV RIKDYILAG
Sbjct: 181 YEAGQARLQALRAKLRQSITPRLGLDFEKSNGAEPTFRSSFSREDYEQAVNRIKDYILAG 240

Query: 241 DCMQVVPSQRMSIEFKAAPIDLYRALRCFNPTPYMYFFNFGDFHVVGSSPEVLVRVEDGL 300
           DCMQVV SQRMSI FKAAPIDLYRALRCFNPTPYMYFFNFGDFHVVGSSPEVLVRVE+GL
Sbjct: 241 DCMQVVISQRMSIPFKAAPIDLYRALRCFNPTPYMYFFNFGDFHVVGSSPEVLVRVEEGL 300

Query: 301 VTVRPIAGTRPRGINEEADLALEQDLLSDAKEIAEHLMLIDLGRNDVGRVSDIGAVKVTE 360
           VTVRPIAGTRPRG +EEADLALEQDLLSDAKE+AEHLMLIDLGRNDVGRV++ G V++TE
Sbjct: 301 VTVRPIAGTRPRGASEEADLALEQDLLSDAKELAEHLMLIDLGRNDVGRVAETGTVRLTE 360

Query: 361 KMVIERYSNVMHIVSNVTGQLREGLSAMDALRAILPAGTLSGAPKIRAMEIIDELEPVKR 420
           KMVIERYSNVMHIVSNVTGQL+  L+AMDALRAILPAGTLSGAPKIRAMEIIDELEPVKR
Sbjct: 361 KMVIERYSNVMHIVSNVTGQLKAPLTAMDALRAILPAGTLSGAPKIRAMEIIDELEPVKR 420

Query: 421 GVYGGAVGYLAWNGNMDTAIAIRTAVIKNGELHVQAGGGIVADSVPALEWEETINKRRAM 480
           GVYGGAVGYLAWNGNMDTAIAIRTAVIK+GELHVQAG GIVADS PALEWEET+NKRRAM
Sbjct: 421 GVYGGAVGYLAWNGNMDTAIAIRTAVIKDGELHVQAGAGIVADSQPALEWEETLNKRRAM 480

Query: 481 FRAVALAEQ 489
           FRAVALAE+
Sbjct: 481 FRAVALAER 489


Lambda     K      H
   0.321    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 809
Number of extensions: 22
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 494
Length adjustment: 34
Effective length of query: 458
Effective length of database: 460
Effective search space:   210680
Effective search space used:   210680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate GFF3583 Psest_3650 (anthranilate synthase component I, non-proteobacterial lineages)
to HMM TIGR00564 (trpE: anthranilate synthase component I (EC 4.1.3.27))

Software error:

../bin/blast/fastacmd -i /tmp/list.3234.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3234.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.