Align acetolactate synthase (subunit 1/2) (EC 2.2.1.6) (characterized)
to candidate GFF1004 Psest_1037 acetolactate synthase, small subunit
Query= BRENDA::P00894 (163 letters) >FitnessBrowser__psRCH2:GFF1004 Length = 163 Score = 216 bits (549), Expect = 2e-61 Identities = 105/162 (64%), Positives = 139/162 (85%), Gaps = 1/162 (0%) Query: 1 MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQI 60 MR I+S+L+ENE GALSRV+GLFSQR YNIESLTVAPT+DPTLSR+T+ TVG E+V+EQI Sbjct: 1 MRHIISLLMENEPGALSRVVGLFSQRNYNIESLTVAPTEDPTLSRLTLTTVGHEEVIEQI 60 Query: 61 EKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLY 120 K L+KLV+V+++ +L + AH+ERE+ML+K++A+G R EVKR T+IFRGQI+DVT S+Y Sbjct: 61 TKNLNKLVEVVKLVDLSESAHIERELMLIKVKATGAQRAEVKRTTDIFRGQIVDVTTSVY 120 Query: 121 TVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGDKIM 162 T+QLAGTS KLD+F+ ++ A I+EV RSGV G+SRGDK++ Sbjct: 121 TIQLAGTSDKLDSFIQAV-GTASILEVVRSGVTGISRGDKVL 161 Lambda K H 0.318 0.136 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 133 Number of extensions: 2 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 163 Length of database: 163 Length adjustment: 18 Effective length of query: 145 Effective length of database: 145 Effective search space: 21025 Effective search space used: 21025 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 43 (21.2 bits)
Align candidate GFF1004 Psest_1037 (acetolactate synthase, small subunit)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.25800.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.25800.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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