Align dihydroxyacid dehydratase (characterized)
to candidate PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9)
Query= CharProtDB::CH_024768 (616 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_973 Length = 613 Score = 912 bits (2358), Expect = 0.0 Identities = 458/617 (74%), Positives = 519/617 (84%), Gaps = 6/617 (0%) Query: 1 MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFTQFVPGHVHLRDLGKLV 60 MP YRS T+THGRNMAGARALWRATGM D DF KPIIA+ NSFTQFVPGHVHL+DLG+LV Sbjct: 1 MPDYRSKTSTHGRNMAGARALWRATGMKDDDFKKPIIAIANSFTQFVPGHVHLKDLGQLV 60 Query: 61 AEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCIS 120 A +IE AGGVAKEFNTIAVDDGIAMGH GMLYSLPSRE+IADSVEYMVNAHCADA+VCIS Sbjct: 61 AREIERAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSREIIADSVEYMVNAHCADAIVCIS 120 Query: 121 NCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQIIKLDLVDAMIQGADPKVSDSQ 180 NCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKL+ LDLVDAM+ AD SD + Sbjct: 121 NCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLASH--GLDLVDAMVIAADSSASDEK 178 Query: 181 SDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADRKQLFLNAGKRIV 240 + ERSACPTCGSCSGMFTANSMNCL EALGL+ PGNGS LATH+DR+QLFL AG+ IV Sbjct: 179 VAEYERSACPTCGSCSGMFTANSMNCLVEALGLALPGNGSTLATHSDREQLFLQAGRTIV 238 Query: 241 ELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMGGSTNTVLHLLAAAQEAEIDFTMSD 300 EL KRYY +ND+S LPRNIA+ AFENAMTLDIAMGGSTNT+LHLLAAAQEAEIDF + D Sbjct: 239 ELCKRYYGENDQSVLPRNIANFQAFENAMTLDIAMGGSTNTILHLLAAAQEAEIDFDLRD 298 Query: 301 IDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIGILGELDRAGLLNRDVKNVLGLTLPQT 360 ID+LSR VPQLCKVAP+ QKYHMEDVHRAGG+ ILG L R GLL+ + V ++ + Sbjct: 299 IDRLSRNVPQLCKVAPNIQKYHMEDVHRAGGIFSILGSLARGGLLHTQLPTVHSRSMEEA 358 Query: 361 LEQYDVMLTQDDAVKNMFRAGPAGIRTTQAFSQDCRWDTLDDDRANGCIRSLEHAYSKDG 420 + ++D+ T D+AV + F+AGPAGI T AFSQ RW+TLDDDR NGCIRS+EHAYS++G Sbjct: 359 IAKWDITQTNDEAVHHFFKAGPAGIPTQTAFSQSTRWETLDDDRENGCIRSVEHAYSQEG 418 Query: 421 GLAVLYGNFAENGCIVKTAGVDDSILKFTGPAKVYESQDDAVEAILGGKVVAGDVVVIRY 480 GLAVLYGN A +GC+VKTAGVD+SI F G AK++ESQD AV IL +V GD+V+IRY Sbjct: 419 GLAVLYGNIALDGCVVKTAGVDESIHVFEGNAKIFESQDSAVRGILADEVKEGDIVIIRY 478 Query: 481 EGPKGGPGMQEMLYPTSFLKSMGLGKACALITDGRFSGGTSGLSIGHVSPEAASGGSIGL 540 EGPKGGPGMQEMLYPTS+LKS GLGKACAL+TDGRFSGGTSGLSIGH SPEAA+GG+IGL Sbjct: 479 EGPKGGPGMQEMLYPTSYLKSKGLGKACALLTDGRFSGGTSGLSIGHASPEAAAGGAIGL 538 Query: 541 IEDGDLIAIDIPNRGIQLQVSDAELAARREAQDARGDKAWTP-KNRERQVSFALRAYASL 599 ++DGD + IDIPNR I L VSD ELAARR QD +G W P + R R+V+ AL+AYA L Sbjct: 539 VQDGDKVLIDIPNRSINLLVSDEELAARRVEQDKKG---WKPVEVRPRKVTTALKAYALL 595 Query: 600 ATSADKGAVRDKSKLGG 616 ATSADKGAVR+K+ L G Sbjct: 596 ATSADKGAVRNKAMLDG 612 Lambda K H 0.317 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1216 Number of extensions: 43 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 616 Length of database: 613 Length adjustment: 37 Effective length of query: 579 Effective length of database: 576 Effective search space: 333504 Effective search space used: 333504 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate PfGW456L13_973 (Dihydroxy-acid dehydratase (EC 4.2.1.9))
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.7474.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7474.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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