Align Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 (characterized)
to candidate PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20)
Query= SwissProt::B4XMC6 (405 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_845 Length = 415 Score = 318 bits (814), Expect = 2e-91 Identities = 169/383 (44%), Positives = 245/383 (63%), Gaps = 2/383 (0%) Query: 13 TPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGADCVSIGEI 72 TP Y+Y I+ +L Y +A G L+CYA+KANSNL +L++LA L +G D VS GE+ Sbjct: 27 TPTYVYSRAHIEAQYLAYADALVGTPHLVCYAVKANSNLGVLNVLARLGAGFDIVSRGEL 86 Query: 73 QRALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARI 132 +R L AG +IVFSGVGK+ ++ +AL++ + NVES EL+ ++ +A LG++A I Sbjct: 87 ERVLAAGGSADKIVFSGVGKTRDDMRRALEVGVHCFNVESTDELERLQVVAAELGVRAPI 146 Query: 133 SIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLEPVSVHFHIGSQLLD 192 S+R+NP++DA THPYISTGLKENKFG+ +A ++++ A + LE V V HIGSQL Sbjct: 147 SLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRAAQLPNLEVVGVDCHIGSQLTT 206 Query: 193 LEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETIKLYDYAQGILNALQGL 252 L P I+A ++ + L GI LR D+GGG+GV Y++EE DY + + L G Sbjct: 207 LPPFIDALDRLLGLVDRLGDCGIYLRHIDLGGGLGVRYKDEEPPLAADYIKAVRERLDGR 266 Query: 253 DLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPSLYHAKHAIRVIT 312 DL ++ EPGR IVA +G L+TQV Y K ++K F IVDA MND +RP+LY A + ++ Sbjct: 267 DLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIVDAAMNDLIRPALYQAWMDVTAVS 326 Query: 313 PSKGREISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSRPKL 372 P + D+VGP+CE+ D KD L LE GD +A+ GAYG M+S YN+R + Sbjct: 327 P-RTSAARAYDIVGPICETGDFLAKDRQL-ALEEGDLLAVHSAGAYGFVMSSNYNTRGRA 384 Query: 373 LELALEDHKIRVIRKREALEDLW 395 E+ ++ + +R+RE + +L+ Sbjct: 385 AEVLVDGDQAFEVRRRETVAELY 407 Lambda K H 0.319 0.138 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 381 Number of extensions: 11 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 405 Length of database: 415 Length adjustment: 31 Effective length of query: 374 Effective length of database: 384 Effective search space: 143616 Effective search space used: 143616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate PfGW456L13_845 (Diaminopimelate decarboxylase (EC 4.1.1.20))
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))
../bin/blast/fastacmd -i /tmp/list.2908.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.2908.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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