Align Gamma-glutamyl phosphate reductase; GPR; Glutamate-5-semialdehyde dehydrogenase; Glutamyl-gamma-semialdehyde dehydrogenase; GSA dehydrogenase; EC 1.2.1.41 (characterized)
to candidate PfGW456L13_1356 Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
Query= SwissProt::P07004 (417 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_1356 Length = 415 Score = 368 bits (944), Expect = e-106 Identities = 189/415 (45%), Positives = 269/415 (64%), Gaps = 5/415 (1%) Query: 2 LEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEA 61 + ++G AA++AS + + S+ +KNR L+ A+ L+A + AN QD+A RANGL A Sbjct: 1 MTRLGRAAREASRVIGRASTAQKNRALQAAANALDAARAELTAANEQDLAAGRANGLEPA 60 Query: 62 MLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYEA 121 +L+RLALTPAR+ G+ +RQV L DPVG + D SG+++ + RVPLGVIG+IYE+ Sbjct: 61 LLERLALTPARIDGMIVGLRQVAALPDPVGAIRDMSFRPSGIQVGKMRVPLGVIGIIYES 120 Query: 122 RPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPDR 181 RPNVT+D ASLCLK+GNA ILRGG E +N A A IQ L LPA VQ ++ DR Sbjct: 121 RPNVTIDAASLCLKSGNATILRGGSEAIHSNRAIAACIQRGLAEADLPAAVVQVVETTDR 180 Query: 182 ALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESVEIAEALKV 241 A V ++ M +Y+D+++PRGG GL + + +PVI G+CH+YV E ++A+A ++ Sbjct: 181 AAVGALITMPEYVDVIVPRGGRGLIERVSRDARVPVIKHLDGICHVYVSEHADLAKAQRI 240 Query: 242 IVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAGPAKV 301 NAKT R C +ETLLV+ +A FLPA++ Q E GV L A + A Sbjct: 241 AFNAKTYRYGICGAMETLLVDHTVAKDFLPAMAAQFREKGVELRGCERTRAIIDA----- 295 Query: 302 VAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVDS 361 VA E++ E+L+ L++++V L AI HI +G+ H+D+I++ + +RFV EVDS Sbjct: 296 VAATEEDWSTEYLAAILSIRVVDGLGQAIEHINHYGSHHTDSIVSEHQGDTRRFVAEVDS 355 Query: 362 SAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDYTIR 416 S+V +N T F DG ++GLGAE+ +ST KLHARGP+GLE LT K+I +GD +R Sbjct: 356 SSVMINTPTCFADGFEYGLGAEIGISTDKLHARGPVGLEGLTCEKYIVVGDGQLR 410 Lambda K H 0.317 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 408 Number of extensions: 17 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 417 Length of database: 415 Length adjustment: 31 Effective length of query: 386 Effective length of database: 384 Effective search space: 148224 Effective search space used: 148224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate PfGW456L13_1356 (Gamma-glutamyl phosphate reductase (EC 1.2.1.41))
to HMM TIGR00407 (proA: glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41))
../bin/blast/fastacmd -i /tmp/list.27606.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27606.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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