Align 3-dehydroquinate dehydratase (EC 4.2.1.10) (characterized)
to candidate Pf1N1B4_2750 3-dehydroquinate dehydratase II (EC 4.2.1.10)
Query= BRENDA::W6JLW3 (160 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_2750 Length = 146 Score = 181 bits (458), Expect = 6e-51 Identities = 81/143 (56%), Positives = 106/143 (74%) Query: 15 PLITVLNGPNLNMLGLRQPGIYGHATLDDVEQVCIQAAERLDVAIDFRQTNGEGELVSWV 74 P++ VLNGPNLN+LG R+P YGH TL D+ +C +AAE + ++FRQTN EGEL+ W+ Sbjct: 3 PIVLVLNGPNLNLLGTREPATYGHETLADISALCGRAAEEFGLTVEFRQTNHEGELLDWI 62 Query: 75 QECRGRADGIVINPAAYGHTSIALLDALLAVELPVVEVHISNIHRREPFRHHTYVSQAAI 134 RGR GIVINPAA+ HTS+A+ DAL+A ELPV+EVH+SN+H REPFRHH++VS A Sbjct: 63 HAARGRCAGIVINPAAWTHTSVAIRDALVASELPVIEVHLSNVHAREPFRHHSFVSSIAA 122 Query: 135 GVICGLGVRGYAHALQAITDMIE 157 V+CG G GY AL+ + +E Sbjct: 123 AVMCGFGSHGYRLALEHFSHRLE 145 Lambda K H 0.322 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 112 Number of extensions: 2 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 160 Length of database: 146 Length adjustment: 17 Effective length of query: 143 Effective length of database: 129 Effective search space: 18447 Effective search space used: 18447 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 43 (21.2 bits)
Align candidate Pf1N1B4_2750 (3-dehydroquinate dehydratase II (EC 4.2.1.10))
to HMM TIGR01088 (aroQ: 3-dehydroquinate dehydratase, type II (EC 4.2.1.10))
../bin/blast/fastacmd -i /tmp/list.13759.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13759.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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