GapMind for Amino acid biosynthesis

 

Alignments for a candidate for cysE in Pseudomonas fluorescens FW300-N1B4

Align Serine acetyltransferase; SAT; EC 2.3.1.30 (characterized)
to candidate Pf1N1B4_867 Serine acetyltransferase (EC 2.3.1.30)

Query= SwissProt::Q06750
         (217 letters)



>FitnessBrowser__pseudo1_N1B4:Pf1N1B4_867
          Length = 258

 Score =  227 bits (578), Expect = 2e-64
 Identities = 114/219 (52%), Positives = 152/219 (69%), Gaps = 13/219 (5%)

Query: 3   FRMLKEDIDTVFDQDPAARSYFEVILTYSGLHAIWAHRIAHALYKRKFYFLARLISQVSR 62
           F  L+EDI +VF +DPAAR+ FEV+  Y G+HAIW HR++ AL+   + +LARL+S   R
Sbjct: 2   FERLREDIQSVFHRDPAARNAFEVLTCYPGMHAIWIHRLSSALWGMGWKWLARLVSNFGR 61

Query: 63  FFTGIEIHPGATIGRRFFIDHGMGVVIGETCEIGNNVTVFQGVTLGGTGKEKGKRHPTIK 122
           + TGIEIHPGA +GRRFFIDHGMG+VIGET EIGN+VT++QGVTLGGT   KGKRHPT++
Sbjct: 62  WLTGIEIHPGAKVGRRFFIDHGMGIVIGETAEIGNDVTLYQGVTLGGTSWNKGKRHPTLE 121

Query: 123 DDALIATGAKVLGSITVGEGSKIGAGSVVLHDVPDFSTVVGIPGRVVVQNGKK---VRRD 179
           D  ++  GAKVLG  TVG G+K+G+ +VV   VP  +TVVGIPGR++V++ ++    R+ 
Sbjct: 122 DGVVVGAGAKVLGPFTVGAGAKVGSNAVVTKAVPPGATVVGIPGRIIVKSDEEQDAKRKA 181

Query: 180 LNH----------QDLPDPVADRFKSLEQQILELKAELE 208
           L            +D+PDPVA     L   +  +   LE
Sbjct: 182 LAEKIGFDAYGVGEDMPDPVARAINQLLDHLQAVDGRLE 220


Lambda     K      H
   0.323    0.141    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 245
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 258
Length adjustment: 23
Effective length of query: 194
Effective length of database: 235
Effective search space:    45590
Effective search space used:    45590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)

Align candidate Pf1N1B4_867 (Serine acetyltransferase (EC 2.3.1.30))
to HMM TIGR01172 (cysE: serine O-acetyltransferase (EC 2.3.1.30))

Software error:

../bin/blast/fastacmd -i /tmp/list.11102.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11102.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.