Align Serine acetyltransferase; SAT; EC 2.3.1.30 (characterized)
to candidate Pf1N1B4_867 Serine acetyltransferase (EC 2.3.1.30)
Query= SwissProt::Q06750 (217 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_867 Length = 258 Score = 227 bits (578), Expect = 2e-64 Identities = 114/219 (52%), Positives = 152/219 (69%), Gaps = 13/219 (5%) Query: 3 FRMLKEDIDTVFDQDPAARSYFEVILTYSGLHAIWAHRIAHALYKRKFYFLARLISQVSR 62 F L+EDI +VF +DPAAR+ FEV+ Y G+HAIW HR++ AL+ + +LARL+S R Sbjct: 2 FERLREDIQSVFHRDPAARNAFEVLTCYPGMHAIWIHRLSSALWGMGWKWLARLVSNFGR 61 Query: 63 FFTGIEIHPGATIGRRFFIDHGMGVVIGETCEIGNNVTVFQGVTLGGTGKEKGKRHPTIK 122 + TGIEIHPGA +GRRFFIDHGMG+VIGET EIGN+VT++QGVTLGGT KGKRHPT++ Sbjct: 62 WLTGIEIHPGAKVGRRFFIDHGMGIVIGETAEIGNDVTLYQGVTLGGTSWNKGKRHPTLE 121 Query: 123 DDALIATGAKVLGSITVGEGSKIGAGSVVLHDVPDFSTVVGIPGRVVVQNGKK---VRRD 179 D ++ GAKVLG TVG G+K+G+ +VV VP +TVVGIPGR++V++ ++ R+ Sbjct: 122 DGVVVGAGAKVLGPFTVGAGAKVGSNAVVTKAVPPGATVVGIPGRIIVKSDEEQDAKRKA 181 Query: 180 LNH----------QDLPDPVADRFKSLEQQILELKAELE 208 L +D+PDPVA L + + LE Sbjct: 182 LAEKIGFDAYGVGEDMPDPVARAINQLLDHLQAVDGRLE 220 Lambda K H 0.323 0.141 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 245 Number of extensions: 10 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 217 Length of database: 258 Length adjustment: 23 Effective length of query: 194 Effective length of database: 235 Effective search space: 45590 Effective search space used: 45590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 46 (22.3 bits)
Align candidate Pf1N1B4_867 (Serine acetyltransferase (EC 2.3.1.30))
to HMM TIGR01172 (cysE: serine O-acetyltransferase (EC 2.3.1.30))
../bin/blast/fastacmd -i /tmp/list.11102.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11102.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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