Align Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Asp/Glu-ADT subunit C; EC 6.3.5.- (uncharacterized)
to candidate Pf1N1B4_1100 Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)
Query= curated2:C1DQ38 (95 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1100 Length = 95 Score = 151 bits (382), Expect = 2e-42 Identities = 75/95 (78%), Positives = 85/95 (89%) Query: 1 MALERSDVEKIAHLARLGLDDAEIPRTTQTLNDILGLIDRMQAVDTHGIEPLAHPLEATQ 60 MALERSDVEKIAHLA LGL+DA++P T LN ILGL+D MQAV+T GIEPLAHPLEA+Q Sbjct: 1 MALERSDVEKIAHLACLGLNDADLPHITSALNSILGLVDEMQAVNTDGIEPLAHPLEASQ 60 Query: 61 RLRPDEVTETDHRDAYQAIAPAVENGLYLVPKVIE 95 RLR D VTET+HR+AYQ+IAPAVENGLYLVPKVI+ Sbjct: 61 RLRADVVTETNHREAYQSIAPAVENGLYLVPKVID 95 Lambda K H 0.317 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 80 Number of extensions: 1 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 95 Length of database: 95 Length adjustment: 10 Effective length of query: 85 Effective length of database: 85 Effective search space: 7225 Effective search space used: 7225 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (20.7 bits) S2: 39 (19.6 bits)
Align candidate Pf1N1B4_1100 (Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7))
to HMM TIGR00135 (gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.31223.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31223.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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