Align Histidinol-phosphate aminotransferase; EC 2.6.1.9; Imidazole acetol-phosphate transaminase (uncharacterized)
to candidate Pf1N1B4_1065 Histidinol-phosphate aminotransferase (EC 2.6.1.9)
Query= curated2:Q48ED0 (350 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1065 Length = 350 Score = 590 bits (1520), Expect = e-173 Identities = 291/350 (83%), Positives = 314/350 (89%) Query: 1 MSKFWSPFVSGLVPYVPGEQPKLTRLVKLNTNENPYGPSPKAVEAMRAALTDDLRLYPDP 60 MSKFWSPFV LVPYVPGEQPKL +LVKLNTNENPYGPSPKA+ AM+ L D+LRLYPDP Sbjct: 1 MSKFWSPFVKSLVPYVPGEQPKLAKLVKLNTNENPYGPSPKALAAMQTELNDNLRLYPDP 60 Query: 61 NSDLLKHAVADYYKVQPNQVFLGNGSDEVLAHIFHALFQHDASLLFPDISYSFYPVYCGL 120 NSDLLK AVA YY VQ NQVFLGNGSDEVLAHIFH L QHD LLFPDISYSFYPVYCGL Sbjct: 61 NSDLLKQAVAKYYGVQGNQVFLGNGSDEVLAHIFHGLLQHDQPLLFPDISYSFYPVYCGL 120 Query: 121 YGIDYEMIALDDQFQIRAEDYAKPNAGIIFPNPNAPTGCLLGLDKVEQIIKASPDSVVVV 180 YGI ++ + LD+QFQI DYAKPN GIIFPNPNAPTGCLL LD VEQI+KASPDSVVVV Sbjct: 121 YGIAFDAVPLDEQFQINPADYAKPNGGIIFPNPNAPTGCLLALDAVEQILKASPDSVVVV 180 Query: 181 DEAYIDFGGETAITLVDRYPNLLVTQTLSKSRSLAGLRVGLAVGHSDLIEALERVKNSFN 240 DEAYIDFGGETAITLVDRYPNLLVTQTLSKSRSLAGLRVGLAVGH DLIEALER+KNSFN Sbjct: 181 DEAYIDFGGETAITLVDRYPNLLVTQTLSKSRSLAGLRVGLAVGHPDLIEALERIKNSFN 240 Query: 241 SYPLDRMANVGGAAAFEDREHFESTRNKVIESREALVEQLQGKGFEVLPSAANFIFARHP 300 SYPLDR+A VG AAAFEDRE+F+ T VI+SRE +V QL+ KGFEVLPSAANFIFARHP Sbjct: 241 SYPLDRLAIVGAAAAFEDREYFDKTCRLVIDSREKVVAQLEAKGFEVLPSAANFIFARHP 300 Query: 301 QHDAAALAAKLREQGVIVRHFKQQRIAQFLRISIGTPEQHQALLEGLSDI 350 +HDAA LAAKLRE+GVIVRHFKQ+RIAQFLRISIGTPEQ+QAL++GL D+ Sbjct: 301 KHDAAGLAAKLRERGVIVRHFKQERIAQFLRISIGTPEQNQALIDGLGDL 350 Lambda K H 0.319 0.137 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 554 Number of extensions: 15 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 350 Length of database: 350 Length adjustment: 29 Effective length of query: 321 Effective length of database: 321 Effective search space: 103041 Effective search space used: 103041 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate Pf1N1B4_1065 (Histidinol-phosphate aminotransferase (EC 2.6.1.9))
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))
../bin/blast/fastacmd -i /tmp/list.2357.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.2357.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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