Align Phosphoribosyl-ATP pyrophosphatase; PRA-PH; EC 3.6.1.31 (uncharacterized)
to candidate Pf1N1B4_1566 Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
Query= curated2:A1U671 (109 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1566 Length = 110 Score = 143 bits (360), Expect = 7e-40 Identities = 75/107 (70%), Positives = 86/107 (80%) Query: 1 MSDVLERLAQVLEARKDADPDTSYVASLHAKGLNKILEKVGEECTETLLAAKDAEHSGET 60 MSD L RLAQVLE RK A D+SYVASL+ KGLNKILEKVGEE ET++AAKDA SG+ Sbjct: 1 MSDTLTRLAQVLEERKGAAADSSYVASLYHKGLNKILEKVGEESVETIIAAKDAAISGDC 60 Query: 61 RDLVYETADLWFHSLVMLSRLGLGPKDVLDELASRFDLSGLEEKASR 107 D++YETADLWFHS+VML++LG P+ VLDEL RF LSG EKASR Sbjct: 61 SDVIYETADLWFHSMVMLAQLGQHPQAVLDELDRRFGLSGHAEKASR 107 Lambda K H 0.313 0.131 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 75 Number of extensions: 2 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 109 Length of database: 110 Length adjustment: 12 Effective length of query: 97 Effective length of database: 98 Effective search space: 9506 Effective search space used: 9506 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.0 bits) S2: 40 (20.0 bits)
Align candidate Pf1N1B4_1566 (Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31))
to HMM TIGR03188 (hisE: phosphoribosyl-ATP diphosphatase (EC 3.6.1.31))
../bin/blast/fastacmd -i /tmp/list.4705.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4705.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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