Align acetolactate synthase (subunit 2/2) (EC 2.2.1.6) (characterized)
to candidate Pf1N1B4_2878 Acetolactate synthase large subunit (EC 2.2.1.6)
Query= BRENDA::P00893 (574 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_2878 Length = 566 Score = 749 bits (1933), Expect = 0.0 Identities = 359/568 (63%), Positives = 444/568 (78%), Gaps = 4/568 (0%) Query: 9 MVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEV 68 M+VR L D+GVK ++GYPGGA+L +YDAL + H+LVRHEQAA HMADG ARATG+ Sbjct: 1 MLVRFLRDEGVKYIYGYPGGALLHVYDALFKEPEVTHILVRHEQAATHMADGYARATGKA 60 Query: 69 GVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKH 128 GVVLVTSGPGATNAITGIATAYMDSIP+V++SGQV ++++G DAFQE DM+GISRP+VKH Sbjct: 61 GVVLVTSGPGATNAITGIATAYMDSIPMVIISGQVPSTMVGTDAFQETDMIGISRPIVKH 120 Query: 129 SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVWPESVSMRSYNPT 188 SF++K +IP+V+KKAF+LA SGRPGPVVVD+PKD+ NPA K Y++P+ +RSY+P Sbjct: 121 SFMIKHASEIPEVMKKAFYLAQSGRPGPVVVDIPKDMTNPAEKFEYIFPKKAKLRSYSPA 180 Query: 189 TTGHKGQIKRALQTLVAAKKPVVYVGGGAITAGCHQQLKETVEALNLPVVCSLMGLGAFP 248 GH GQI++A + L+AAK+PV+Y GGG I G L E + LNLPV +LMGLGA+P Sbjct: 181 VRGHSGQIRKAAEMLLAAKRPVLYSGGGVILGGGSAPLTELAKMLNLPVTNTLMGLGAYP 240 Query: 249 ATHRQALGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPT 308 T RQ +GMLGMHG+Y AN+ MH+ADVI AVG RFDDR N AK+CPNA ++HIDIDP Sbjct: 241 GTDRQFIGMLGMHGSYTANLAMHHADVILAVGARFDDRVINGPAKFCPNAKIIHIDIDPA 300 Query: 309 SISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRA-RQCLKYDT 367 SISKT+ AD+PIVG VL +M+ +L + + + WW+Q+++WR R YD Sbjct: 301 SISKTIKADVPIVGPVESVLTEMVAILKEIGETPNKESVASWWKQVDEWRGDRGLFPYDK 360 Query: 368 -HSEKIKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFG 426 IKPQ VIETL +TKGDA+VTSDVGQHQMFAA YY F+KP RWINSGGLGTMGFG Sbjct: 361 GDGSVIKPQTVIETLCEVTKGDAFVTSDVGQHQMFAAQYYTFNKPNRWINSGGLGTMGFG 420 Query: 427 LPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVNLNNRYLGMVKQWQD 486 LPAA+G+K++ P++ V CVTG+GSIQMNIQELST LQY LPV +V LNN LGMV+QWQD Sbjct: 421 LPAAMGIKLSFPDDDVACVTGEGSIQMNIQELSTCLQYGLPVKIVILNNGVLGMVRQWQD 480 Query: 487 MIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQISHPHELESKLSEALEQVRNNRLVFVDVT 546 M Y RHS SYM+SLPDFV+LAEAYGHVG++I+ +L+SK+ EA +RLV +D++ Sbjct: 481 MSYGSRHSHSYMESLPDFVKLAEAYGHVGVRITESKDLKSKMEEAF--AMKDRLVVIDIS 538 Query: 547 VDGSEHVYPMQIRGGGMDEMWLSKTERT 574 VD SEHVYPMQI+ G M +MWLSKTERT Sbjct: 539 VDTSEHVYPMQIKDGSMRDMWLSKTERT 566 Lambda K H 0.319 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1015 Number of extensions: 32 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 574 Length of database: 566 Length adjustment: 36 Effective length of query: 538 Effective length of database: 530 Effective search space: 285140 Effective search space used: 285140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)
Align candidate Pf1N1B4_2878 (Acetolactate synthase large subunit (EC 2.2.1.6))
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.11171.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11171.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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